Gene annotation
Transcriptome id Sobic.003G425200.1
Synonym Sb03g045750,
Functional annotation Calmodulin-like protein 1 (PubMedID : 24906815)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
calmodulin-like protein 1, putative, expressed
UniProt C5XHU8
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF590
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41410 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os01g72080.1 : calmodulin-like protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a026006
Brachypodium PNT73593
Barley HORVU3Hr1G106950.2 , HORVU3Hr1G106950.3 , HORVU3Hr1G106950.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
2 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
3 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
4 Sobic.002G207300 tetraspanin family protein, putative, expressed -
5 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
6 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
7 Sobic.001G370600 expressed protein -
8 Sobic.007G145700 expressed protein -
9 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
10 Sobic.009G044400 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
11 Sobic.003G352400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
12 Sobic.004G259500 expressed protein -
13 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
14 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
15 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
16 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
17 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
18 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
19 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3


Gene co-expression network
sample Sobic003G425200 Sobic003G425200 Sobic006G146500 Sobic006G146500 Sobic003G425200--Sobic006G146500 Sobic003G341100 Sobic003G341100 Sobic003G425200--Sobic003G341100 Sobic007G201100 Sobic007G201100 Sobic003G425200--Sobic007G201100 Sobic002G207300 Sobic002G207300 Sobic003G425200--Sobic002G207300 Sobic007G011000 Sobic007G011000 Sobic003G425200--Sobic007G011000 Sobic004G065900 Sobic004G065900 Sobic003G425200--Sobic004G065900 Sobic001G370600 Sobic001G370600 Sobic003G425200--Sobic001G370600 Sobic007G145700 Sobic007G145700 Sobic003G425200--Sobic007G145700 Sobic002G118600 Sobic002G118600 Sobic003G425200--Sobic002G118600 Sobic006G146500--Sobic003G425200 Sobic006G146500--Sobic004G065900 Sobic006G146500--Sobic007G145700 Sobic006G146500--Sobic003G341100 Sobic006G146500--Sobic002G207300 Sobic002G294600 Sobic002G294600 Sobic006G146500--Sobic002G294600 Sobic006G146500--Sobic007G201100 Sobic002G367900 Sobic002G367900 Sobic006G146500--Sobic002G367900 Sobic001G081600 Sobic001G081600 Sobic006G146500--Sobic001G081600 Sobic009G217500 Sobic009G217500 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic007G077100 Sobic007G077100 Sobic003G341100--Sobic007G077100 Sobic010G102000 Sobic010G102000 Sobic003G341100--Sobic010G102000 Sobic001G341600 Sobic001G341600 Sobic003G341100--Sobic001G341600 Sobic006G273800 Sobic006G273800 Sobic003G341100--Sobic006G273800 Sobic010G023200 Sobic010G023200 Sobic003G341100--Sobic010G023200 Sobic003G341100--Sobic002G118600 Sobic007G201100--Sobic002G207300 Sobic007G201100--Sobic004G065900 Sobic007G201100--Sobic003G425200 Sobic007G201100--Sobic003G341100 Sobic007G201100--Sobic007G077100 Sobic007G201100--Sobic009G217500 Sobic007G201100--Sobic006G146500 Sobic007G201100--Sobic002G367900 Sobic007G201100--Sobic007G145700 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic002G207300--Sobic007G201100 Sobic002G207300--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G207300--Sobic001G118900 Sobic002G207300--Sobic003G425200 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic001G095700 Sobic001G095700 Sobic002G207300--Sobic001G095700 Sobic007G011000--Sobic002G118600 Sobic002G330300 Sobic002G330300 Sobic007G011000--Sobic002G330300 Sobic010G228000 Sobic010G228000 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic004G280800 Sobic004G280800 Sobic007G011000--Sobic004G280800 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic004G025000 Sobic004G025000 Sobic007G011000--Sobic004G025000 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic004G065900--Sobic006G146500 Sobic004G065900--Sobic007G201100 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400 Sobic001G370600--Sobic006G273800 Sobic002G197600 Sobic002G197600 Sobic001G370600--Sobic002G197600 Sobic007G051800 Sobic007G051800 Sobic001G370600--Sobic007G051800 Sobic001G370600--Sobic002G367900 Sobic001G370600--Sobic003G425200 Sobic006G210300 Sobic006G210300 Sobic001G370600--Sobic006G210300 Sobic001G370600--Sobic003G341100 Sobic001G370600--Sobic007G011000 Sobic001G370600--Sobic007G201100 Sobic007G145700--Sobic003G341100 Sobic007G145700--Sobic002G294600 Sobic007G145700--Sobic010G102000 Sobic001G462800 Sobic001G462800 Sobic007G145700--Sobic001G462800 Sobic007G145700--Sobic006G146500 Sobic007G145700--Sobic009G217500 Sobic007G145700--Sobic001G095700 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic002G118600--Sobic001G341600 Sobic002G118600--Sobic003G341100 Sobic002G118600--Sobic010G228000 Sobic002G374100 Sobic002G374100 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.