Gene annotation
Transcriptome id Sobic.003G333900.1
Synonym Sb03g037880
Functional annotation pentatricopeptide repeat-containing protein, putative, expressed
UniProt C5XN70
Pfam -
Panther DB PTHR10759 PTHR10759:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G01170 : Ribosomal protein L34e superfamily protein
RAP-DB (Rice) LOC_Os01g59950.1 : pentatricopeptide repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027108 , Zm00025a039795
Brachypodium KQK10298 , PNT73100 , KQK05687 , PNT73099
Barley HORVU3Hr1G079950.1 , HORVU1Hr1G068940.1 , HORVU1Hr1G068940.2 , HORVU1Hr1G068940.3 , HORVU1Hr1G068940.4
Wheat TraesCS1D02G305100 , TraesCS1D02G305100 , TraesCS1B02G316100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
2 Sobic.003G141000 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
3 Sobic.003G197300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AR791, putative, expressed -
4 Sobic.006G269700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
6 Sobic.009G127300 pentatricopeptide repeat-containing protein, putative, expressed -
7 Sobic.004G315600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
8 Sobic.001G450700 RHsf 8/ Hsf 3(PubMedID : 27006630)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
9 Sobic.002G134400 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
10 Sobic.003G237900 potassium channel AKT1, putative, expressed -
11 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
12 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
13 Sobic.001G222200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@endo-beta-N-acetylglucosaminidase, putative, expressed -
14 Sobic.009G187300 allyl alcohol dehydrogenase, putative, expressed -
15 Sobic.005G036400 RING-H2 finger protein, putative, expressed -
16 Sobic.007G124100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
17 Sobic.007G224300 RING finger protein, putative, expressed -
18 Sobic.002G035900 glycine-rich protein, putative, expressed K13344: peroxin-13
19 Sobic.003G409800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
20 Sobic.002G412800 stress-related protein, putative, expressed -


Gene co-expression network
sample Sobic003G333900 Sobic003G333900 Sobic007G169200 Sobic007G169200 Sobic003G333900--Sobic007G169200 Sobic003G141000 Sobic003G141000 Sobic003G333900--Sobic003G141000 Sobic003G197300 Sobic003G197300 Sobic003G333900--Sobic003G197300 Sobic006G269700 Sobic006G269700 Sobic003G333900--Sobic006G269700 Sobic001G311100 Sobic001G311100 Sobic003G333900--Sobic001G311100 Sobic009G127300 Sobic009G127300 Sobic003G333900--Sobic009G127300 Sobic004G315600 Sobic004G315600 Sobic003G333900--Sobic004G315600 Sobic001G450700 Sobic001G450700 Sobic003G333900--Sobic001G450700 Sobic002G134400 Sobic002G134400 Sobic003G333900--Sobic002G134400 Sobic002G197600 Sobic002G197600 Sobic007G169200--Sobic002G197600 Sobic002G207300 Sobic002G207300 Sobic007G169200--Sobic002G207300 Sobic002G330300 Sobic002G330300 Sobic007G169200--Sobic002G330300 Sobic002G118600 Sobic002G118600 Sobic007G169200--Sobic002G118600 Sobic007G011000 Sobic007G011000 Sobic007G169200--Sobic007G011000 Sobic001G403600 Sobic001G403600 Sobic007G169200--Sobic001G403600 Sobic007G169200--Sobic003G141000 Sobic001G386000 Sobic001G386000 Sobic007G169200--Sobic001G386000 Sobic007G169200--Sobic001G450700 Sobic003G141000--Sobic001G450700 Sobic003G141000--Sobic007G169200 Sobic001G410100 Sobic001G410100 Sobic003G141000--Sobic001G410100 Sobic003G141000--Sobic002G207300 Sobic003G141000--Sobic001G386000 Sobic001G436000 Sobic001G436000 Sobic003G141000--Sobic001G436000 Sobic007G196600 Sobic007G196600 Sobic003G141000--Sobic007G196600 Sobic003G290100 Sobic003G290100 Sobic003G141000--Sobic003G290100 Sobic007G006600 Sobic007G006600 Sobic003G141000--Sobic007G006600 Sobic005G110421 Sobic005G110421 Sobic003G197300--Sobic005G110421 Sobic001G206300 Sobic001G206300 Sobic003G197300--Sobic001G206300 Sobic002G225300 Sobic002G225300 Sobic003G197300--Sobic002G225300 Sobic001G510400 Sobic001G510400 Sobic003G197300--Sobic001G510400 Sobic005G061033 Sobic005G061033 Sobic003G197300--Sobic005G061033 Sobic002G185300 Sobic002G185300 Sobic003G197300--Sobic002G185300 Sobic003G289900 Sobic003G289900 Sobic003G197300--Sobic003G289900 Sobic005G061000 Sobic005G061000 Sobic003G197300--Sobic005G061000 Sobic003G281600 Sobic003G281600 Sobic003G197300--Sobic003G281600 Sobic003G040200 Sobic003G040200 Sobic006G269700--Sobic003G040200 Sobic003G071000 Sobic003G071000 Sobic006G269700--Sobic003G071000 Sobic002G036400 Sobic002G036400 Sobic006G269700--Sobic002G036400 Sobic003G416400 Sobic003G416400 Sobic006G269700--Sobic003G416400 Sobic006G269700--Sobic003G333900 Sobic002G343300 Sobic002G343300 Sobic006G269700--Sobic002G343300 Sobic008G110300 Sobic008G110300 Sobic006G269700--Sobic008G110300 Sobic009G258100 Sobic009G258100 Sobic006G269700--Sobic009G258100 Sobic006G269700--Sobic001G311100 Sobic002G261900 Sobic002G261900 Sobic001G311100--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic001G311100--Sobic010G094600 Sobic009G160200 Sobic009G160200 Sobic001G311100--Sobic009G160200 Sobic003G043400 Sobic003G043400 Sobic001G311100--Sobic003G043400 Sobic010G026700 Sobic010G026700 Sobic001G311100--Sobic010G026700 Sobic001G283500 Sobic001G283500 Sobic001G311100--Sobic001G283500 Sobic010G188100 Sobic010G188100 Sobic001G311100--Sobic010G188100 Sobic010G017000 Sobic010G017000 Sobic001G311100--Sobic010G017000 Sobic002G083266 Sobic002G083266 Sobic001G311100--Sobic002G083266 Sobic001G011800 Sobic001G011800 Sobic009G127300--Sobic001G011800 Sobic003G436500 Sobic003G436500 Sobic009G127300--Sobic003G436500 Sobic004G023900 Sobic004G023900 Sobic009G127300--Sobic004G023900 Sobic006G276200 Sobic006G276200 Sobic009G127300--Sobic006G276200 Sobic001G147100 Sobic001G147100 Sobic009G127300--Sobic001G147100 Sobic004G028000 Sobic004G028000 Sobic009G127300--Sobic004G028000 Sobic001G218800 Sobic001G218800 Sobic009G127300--Sobic001G218800 Sobic002G037800 Sobic002G037800 Sobic009G127300--Sobic002G037800 Sobic001G012100 Sobic001G012100 Sobic009G127300--Sobic001G012100 Sobic009G183101 Sobic009G183101 Sobic004G315600--Sobic009G183101 Sobic010G026500 Sobic010G026500 Sobic004G315600--Sobic010G026500 Sobic009G231200 Sobic009G231200 Sobic004G315600--Sobic009G231200 Sobic001G523200 Sobic001G523200 Sobic004G315600--Sobic001G523200 Sobic010G260300 Sobic010G260300 Sobic004G315600--Sobic010G260300 Sobic010G182700 Sobic010G182700 Sobic004G315600--Sobic010G182700 Sobic001G426800 Sobic001G426800 Sobic004G315600--Sobic001G426800 Sobic009G195800 Sobic009G195800 Sobic004G315600--Sobic009G195800 Sobic003G397500 Sobic003G397500 Sobic004G315600--Sobic003G397500 Sobic001G450700--Sobic003G141000 Sobic001G450700--Sobic007G169200 Sobic001G450700--Sobic007G006600 Sobic001G220400 Sobic001G220400 Sobic001G450700--Sobic001G220400 Sobic003G369500 Sobic003G369500 Sobic001G450700--Sobic003G369500 Sobic001G450700--Sobic001G436000 Sobic010G232100 Sobic010G232100 Sobic001G450700--Sobic010G232100 Sobic001G450700--Sobic007G196600 Sobic002G293300 Sobic002G293300 Sobic001G450700--Sobic002G293300 Sobic002G134400--Sobic001G311100 Sobic001G085900 Sobic001G085900 Sobic002G134400--Sobic001G085900 Sobic002G134400--Sobic010G094600 Sobic002G134400--Sobic002G261900 Sobic002G134400--Sobic002G083266 Sobic004G083000 Sobic004G083000 Sobic002G134400--Sobic004G083000 Sobic001G298300 Sobic001G298300 Sobic002G134400--Sobic001G298300 Sobic001G289400 Sobic001G289400 Sobic002G134400--Sobic001G289400 Sobic007G006700 Sobic007G006700 Sobic002G134400--Sobic007G006700
Octagon: transcription factors


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