Gene annotation
Transcriptome id Sobic.006G269700.1
Synonym Sb06g033120
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5YAL2
Pfam PF00335
Panther DB PTHR19282 PTHR19282:SF158
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G20740 : Tetraspanin family protein
RAP-DB (Rice) LOC_Os04g58330.1 : expressed protein
MaizeGDB (Corn) Zm00025a057396 , Zm00025a009272
Brachypodium KQJ85328 , KQJ85329 , KQJ85330
Barley -
Wheat TraesCS2A02G587000 , TraesCS2B02G596400 , TraesCS1D02G313600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G040200 expressed protein -
2 Sobic.003G071000 SLT1 protein, putative, expressed -
3 Sobic.002G036400 OsFBK18 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
5 Sobic.003G333900 pentatricopeptide repeat-containing protein, putative, expressed -
6 Sobic.002G343300 zinc finger family protein, putative, expressed -
7 Sobic.008G110300 OsFBX448 - F-box domain containing protein, expressed -
8 Sobic.009G258100 early-responsive to dehydration protein-related, putative, expressed -
9 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
10 Sobic.007G217600 pentatricopeptide, putative, expressed -
11 Sobic.008G144900 DUF221 domain containing protein, expressed -
12 Sobic.009G135900 cysteine proteinase inhibitor precursor protein, putative, expressed -
13 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
14 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.010G071600 PTF1, putative, expressed -
16 Sobic.002G290400 Protein kinase superfamily protein(PubMedID : 26465154)@serine/threonine-protein kinase SRPK1, putative, expressed -
17 Sobic.001G039500 protein kinase domain containing protein, expressed -
18 Sobic.002G201900 transporter family protein, putative, expressed -
19 Sobic.002G358800 interferon-related developmental regulator, putative, expressed -
20 Sobic.006G173800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase 3, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter


Gene co-expression network
sample Sobic006G269700 Sobic006G269700 Sobic003G040200 Sobic003G040200 Sobic006G269700--Sobic003G040200 Sobic003G071000 Sobic003G071000 Sobic006G269700--Sobic003G071000 Sobic002G036400 Sobic002G036400 Sobic006G269700--Sobic002G036400 Sobic003G416400 Sobic003G416400 Sobic006G269700--Sobic003G416400 Sobic003G333900 Sobic003G333900 Sobic006G269700--Sobic003G333900 Sobic002G343300 Sobic002G343300 Sobic006G269700--Sobic002G343300 Sobic008G110300 Sobic008G110300 Sobic006G269700--Sobic008G110300 Sobic009G258100 Sobic009G258100 Sobic006G269700--Sobic009G258100 Sobic001G311100 Sobic001G311100 Sobic006G269700--Sobic001G311100 Sobic006G019300 Sobic006G019300 Sobic003G040200--Sobic006G019300 Sobic007G223000 Sobic007G223000 Sobic003G040200--Sobic007G223000 Sobic010G132600 Sobic010G132600 Sobic003G040200--Sobic010G132600 Sobic004G243600 Sobic004G243600 Sobic003G040200--Sobic004G243600 Sobic003G040200--Sobic006G269700 Sobic007G099200 Sobic007G099200 Sobic003G040200--Sobic007G099200 Sobic010G220500 Sobic010G220500 Sobic003G040200--Sobic010G220500 Sobic007G217600 Sobic007G217600 Sobic003G040200--Sobic007G217600 Sobic008G054000 Sobic008G054000 Sobic003G040200--Sobic008G054000 Sobic010G082700 Sobic010G082700 Sobic003G071000--Sobic010G082700 Sobic003G054200 Sobic003G054200 Sobic003G071000--Sobic003G054200 Sobic002G110700 Sobic002G110700 Sobic003G071000--Sobic002G110700 Sobic001G175600 Sobic001G175600 Sobic003G071000--Sobic001G175600 Sobic010G000300 Sobic010G000300 Sobic003G071000--Sobic010G000300 Sobic009G049300 Sobic009G049300 Sobic003G071000--Sobic009G049300 Sobic004G001400 Sobic004G001400 Sobic003G071000--Sobic004G001400 Sobic002G105200 Sobic002G105200 Sobic003G071000--Sobic002G105200 Sobic001G395400 Sobic001G395400 Sobic003G071000--Sobic001G395400 Sobic002G036400--Sobic002G343300 Sobic003G339700 Sobic003G339700 Sobic002G036400--Sobic003G339700 Sobic003G373600 Sobic003G373600 Sobic002G036400--Sobic003G373600 Sobic002G036400--Sobic006G269700 Sobic003G350800 Sobic003G350800 Sobic002G036400--Sobic003G350800 Sobic009G135900 Sobic009G135900 Sobic002G036400--Sobic009G135900 Sobic004G279100 Sobic004G279100 Sobic002G036400--Sobic004G279100 Sobic010G251300 Sobic010G251300 Sobic002G036400--Sobic010G251300 Sobic002G020400 Sobic002G020400 Sobic002G036400--Sobic002G020400 Sobic003G416400--Sobic001G395400 Sobic003G416400--Sobic002G105200 Sobic002G375300 Sobic002G375300 Sobic003G416400--Sobic002G375300 Sobic001G057800 Sobic001G057800 Sobic003G416400--Sobic001G057800 Sobic003G077900 Sobic003G077900 Sobic003G416400--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic003G416400--Sobic002G400000 Sobic003G201900 Sobic003G201900 Sobic003G416400--Sobic003G201900 Sobic002G385900 Sobic002G385900 Sobic003G416400--Sobic002G385900 Sobic001G323000 Sobic001G323000 Sobic003G416400--Sobic001G323000 Sobic007G169200 Sobic007G169200 Sobic003G333900--Sobic007G169200 Sobic003G141000 Sobic003G141000 Sobic003G333900--Sobic003G141000 Sobic003G197300 Sobic003G197300 Sobic003G333900--Sobic003G197300 Sobic003G333900--Sobic006G269700 Sobic003G333900--Sobic001G311100 Sobic009G127300 Sobic009G127300 Sobic003G333900--Sobic009G127300 Sobic004G315600 Sobic004G315600 Sobic003G333900--Sobic004G315600 Sobic001G450700 Sobic001G450700 Sobic003G333900--Sobic001G450700 Sobic002G134400 Sobic002G134400 Sobic003G333900--Sobic002G134400 Sobic004G255700 Sobic004G255700 Sobic002G343300--Sobic004G255700 Sobic008G047400 Sobic008G047400 Sobic002G343300--Sobic008G047400 Sobic006G033200 Sobic006G033200 Sobic002G343300--Sobic006G033200 Sobic004G059900 Sobic004G059900 Sobic002G343300--Sobic004G059900 Sobic009G066900 Sobic009G066900 Sobic002G343300--Sobic009G066900 Sobic002G134600 Sobic002G134600 Sobic002G343300--Sobic002G134600 Sobic008G124900 Sobic008G124900 Sobic002G343300--Sobic008G124900 Sobic009G219900 Sobic009G219900 Sobic002G343300--Sobic009G219900 Sobic001G541100 Sobic001G541100 Sobic002G343300--Sobic001G541100 Sobic004G189200 Sobic004G189200 Sobic008G110300--Sobic004G189200 Sobic008G110300--Sobic003G373600 Sobic004G231900 Sobic004G231900 Sobic008G110300--Sobic004G231900 Sobic002G290400 Sobic002G290400 Sobic008G110300--Sobic002G290400 Sobic010G230500 Sobic010G230500 Sobic008G110300--Sobic010G230500 Sobic010G077100 Sobic010G077100 Sobic008G110300--Sobic010G077100 Sobic007G121300 Sobic007G121300 Sobic008G110300--Sobic007G121300 Sobic008G110300--Sobic009G258100 Sobic006G051800 Sobic006G051800 Sobic008G110300--Sobic006G051800 Sobic002G358800 Sobic002G358800 Sobic009G258100--Sobic002G358800 Sobic009G258100--Sobic010G230500 Sobic008G077600 Sobic008G077600 Sobic009G258100--Sobic008G077600 Sobic003G425300 Sobic003G425300 Sobic009G258100--Sobic003G425300 Sobic009G258100--Sobic003G373600 Sobic009G129800 Sobic009G129800 Sobic009G258100--Sobic009G129800 Sobic009G258100--Sobic002G290400 Sobic009G258100--Sobic003G350800 Sobic009G180500 Sobic009G180500 Sobic009G258100--Sobic009G180500 Sobic002G261900 Sobic002G261900 Sobic001G311100--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic001G311100--Sobic010G094600 Sobic009G160200 Sobic009G160200 Sobic001G311100--Sobic009G160200 Sobic003G043400 Sobic003G043400 Sobic001G311100--Sobic003G043400 Sobic010G026700 Sobic010G026700 Sobic001G311100--Sobic010G026700 Sobic001G283500 Sobic001G283500 Sobic001G311100--Sobic001G283500 Sobic010G188100 Sobic010G188100 Sobic001G311100--Sobic010G188100 Sobic010G017000 Sobic010G017000 Sobic001G311100--Sobic010G017000 Sobic002G083266 Sobic002G083266 Sobic001G311100--Sobic002G083266
Octagon: transcription factors


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