Gene annotation
Transcriptome id Sobic.007G217600.1
Synonym Sb07g028400
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YJ88
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF439
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80150 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g39050.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a046174 , Zm00025a005002
Brachypodium KQJ98824 , KQJ98823
Barley HORVU3Hr1G070290.2 , HORVU3Hr1G070290.1 , HORVU7Hr1G049150.4 , HORVU7Hr1G049150.5 , HORVU7Hr1G049150.1 , HORVU7Hr1G049150.2 , HORVU7Hr1G049150.3
Wheat -
Populus -


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cDNA sequences
Sobic.007G217600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G426900 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein
2 Sobic.003G040200 expressed protein -
3 Sobic.004G023900 3-isopropylmalate dehydratase large subunit 2, putative, expressed K01703: leuC, 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
4 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
5 Sobic.001G039500 protein kinase domain containing protein, expressed -
6 Sobic.002G294400 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
7 Sobic.006G269700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.002G275200 PPR repeat containing protein, expressed -
9 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.001G122900 expressed protein -
11 Sobic.003G288800 phosphoesterase, putative, expressed K08073: bifunctional polynucleotide phosphatase/kinase
12 Sobic.007G123900 WD-40 repeat family protein, putative, expressed -
13 Sobic.006G173800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase 3, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
14 Sobic.003G373600 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
15 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
16 Sobic.004G097200 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
17 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
18 Sobic.001G057100 plant-specific domain TIGR01615 family protein, expressed -
19 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
20 Sobic.004G125800 tocopherol cyclase, chloroplast precursor, putative, expressed K09834: VTE1, tocopherol cyclase


Gene co-expression network
sample Sobic007G217600 Sobic007G217600 Sobic003G426900 Sobic003G426900 Sobic007G217600--Sobic003G426900 Sobic003G040200 Sobic003G040200 Sobic007G217600--Sobic003G040200 Sobic004G023900 Sobic004G023900 Sobic007G217600--Sobic004G023900 Sobic006G019300 Sobic006G019300 Sobic007G217600--Sobic006G019300 Sobic001G039500 Sobic001G039500 Sobic007G217600--Sobic001G039500 Sobic002G294400 Sobic002G294400 Sobic007G217600--Sobic002G294400 Sobic006G269700 Sobic006G269700 Sobic007G217600--Sobic006G269700 Sobic002G275200 Sobic002G275200 Sobic007G217600--Sobic002G275200 Sobic003G150500 Sobic003G150500 Sobic007G217600--Sobic003G150500 Sobic003G428600 Sobic003G428600 Sobic003G426900--Sobic003G428600 Sobic002G351200 Sobic002G351200 Sobic003G426900--Sobic002G351200 Sobic002G213400 Sobic002G213400 Sobic003G426900--Sobic002G213400 Sobic001G018000 Sobic001G018000 Sobic003G426900--Sobic001G018000 Sobic007G010800 Sobic007G010800 Sobic003G426900--Sobic007G010800 Sobic010G101000 Sobic010G101000 Sobic003G426900--Sobic010G101000 Sobic001G112900 Sobic001G112900 Sobic003G426900--Sobic001G112900 Sobic010G113200 Sobic010G113200 Sobic003G426900--Sobic010G113200 Sobic003G304300 Sobic003G304300 Sobic003G426900--Sobic003G304300 Sobic003G040200--Sobic006G019300 Sobic007G223000 Sobic007G223000 Sobic003G040200--Sobic007G223000 Sobic010G132600 Sobic010G132600 Sobic003G040200--Sobic010G132600 Sobic004G243600 Sobic004G243600 Sobic003G040200--Sobic004G243600 Sobic003G040200--Sobic006G269700 Sobic007G099200 Sobic007G099200 Sobic003G040200--Sobic007G099200 Sobic010G220500 Sobic010G220500 Sobic003G040200--Sobic010G220500 Sobic003G040200--Sobic007G217600 Sobic008G054000 Sobic008G054000 Sobic003G040200--Sobic008G054000 Sobic003G190500 Sobic003G190500 Sobic004G023900--Sobic003G190500 Sobic004G023900--Sobic001G039500 Sobic009G127300 Sobic009G127300 Sobic004G023900--Sobic009G127300 Sobic006G245100 Sobic006G245100 Sobic004G023900--Sobic006G245100 Sobic004G018000 Sobic004G018000 Sobic004G023900--Sobic004G018000 Sobic003G159500 Sobic003G159500 Sobic004G023900--Sobic003G159500 Sobic002G390300 Sobic002G390300 Sobic004G023900--Sobic002G390300 Sobic001G008700 Sobic001G008700 Sobic004G023900--Sobic001G008700 Sobic002G119400 Sobic002G119400 Sobic004G023900--Sobic002G119400 Sobic005G100700 Sobic005G100700 Sobic006G019300--Sobic005G100700 Sobic002G374300 Sobic002G374300 Sobic006G019300--Sobic002G374300 Sobic006G056700 Sobic006G056700 Sobic006G019300--Sobic006G056700 Sobic001G501800 Sobic001G501800 Sobic006G019300--Sobic001G501800 Sobic006G019300--Sobic004G243600 Sobic001G456300 Sobic001G456300 Sobic006G019300--Sobic001G456300 Sobic004G317300 Sobic004G317300 Sobic006G019300--Sobic004G317300 Sobic005G200800 Sobic005G200800 Sobic006G019300--Sobic005G200800 Sobic003G360400 Sobic003G360400 Sobic006G019300--Sobic003G360400 Sobic010G015900 Sobic010G015900 Sobic001G039500--Sobic010G015900 Sobic001G039500--Sobic004G023900 Sobic002G400400 Sobic002G400400 Sobic001G039500--Sobic002G400400 Sobic001G039500--Sobic003G159500 Sobic001G039500--Sobic006G245100 Sobic008G115000 Sobic008G115000 Sobic001G039500--Sobic008G115000 Sobic007G041300 Sobic007G041300 Sobic001G039500--Sobic007G041300 Sobic006G120800 Sobic006G120800 Sobic001G039500--Sobic006G120800 Sobic001G033400 Sobic001G033400 Sobic001G039500--Sobic001G033400 Sobic001G410000 Sobic001G410000 Sobic002G294400--Sobic001G410000 Sobic001G436400 Sobic001G436400 Sobic002G294400--Sobic001G436400 Sobic002G081400 Sobic002G081400 Sobic002G294400--Sobic002G081400 Sobic004G271600 Sobic004G271600 Sobic002G294400--Sobic004G271600 Sobic003G288800 Sobic003G288800 Sobic002G294400--Sobic003G288800 Sobic002G085100 Sobic002G085100 Sobic002G294400--Sobic002G085100 Sobic004G207400 Sobic004G207400 Sobic002G294400--Sobic004G207400 Sobic003G340600 Sobic003G340600 Sobic002G294400--Sobic003G340600 Sobic004G317700 Sobic004G317700 Sobic002G294400--Sobic004G317700 Sobic006G269700--Sobic003G040200 Sobic003G071000 Sobic003G071000 Sobic006G269700--Sobic003G071000 Sobic002G036400 Sobic002G036400 Sobic006G269700--Sobic002G036400 Sobic003G416400 Sobic003G416400 Sobic006G269700--Sobic003G416400 Sobic003G333900 Sobic003G333900 Sobic006G269700--Sobic003G333900 Sobic002G343300 Sobic002G343300 Sobic006G269700--Sobic002G343300 Sobic008G110300 Sobic008G110300 Sobic006G269700--Sobic008G110300 Sobic009G258100 Sobic009G258100 Sobic006G269700--Sobic009G258100 Sobic001G311100 Sobic001G311100 Sobic006G269700--Sobic001G311100 Sobic009G040400 Sobic009G040400 Sobic002G275200--Sobic009G040400 Sobic008G002400 Sobic008G002400 Sobic002G275200--Sobic008G002400 Sobic009G259100 Sobic009G259100 Sobic002G275200--Sobic009G259100 Sobic002G275100 Sobic002G275100 Sobic002G275200--Sobic002G275100 Sobic005G002400 Sobic005G002400 Sobic002G275200--Sobic005G002400 Sobic005G132000 Sobic005G132000 Sobic002G275200--Sobic005G132000 Sobic010G178000 Sobic010G178000 Sobic002G275200--Sobic010G178000 Sobic002G356900 Sobic002G356900 Sobic002G275200--Sobic002G356900 Sobic003G029500 Sobic003G029500 Sobic002G275200--Sobic003G029500 Sobic002G043800 Sobic002G043800 Sobic003G150500--Sobic002G043800 Sobic003G298200 Sobic003G298200 Sobic003G150500--Sobic003G298200 Sobic003G107500 Sobic003G107500 Sobic003G150500--Sobic003G107500 Sobic010G150100 Sobic010G150100 Sobic003G150500--Sobic010G150100 Sobic001G282800 Sobic001G282800 Sobic003G150500--Sobic001G282800 Sobic001G411200 Sobic001G411200 Sobic003G150500--Sobic001G411200 Sobic005G176100 Sobic005G176100 Sobic003G150500--Sobic005G176100 Sobic004G151300 Sobic004G151300 Sobic003G150500--Sobic004G151300 Sobic004G086300 Sobic004G086300 Sobic003G150500--Sobic004G086300
Octagon: transcription factors


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