Gene annotation
Transcriptome id Sobic.001G057100.1
Synonym Sb01g005190
Functional annotation plant-specific domain TIGR01615 family protein, expressed
UniProt C5WX72
Pfam PF04720
Panther DB PTHR31579 PTHR31579:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38820 : Protein of unknown function (DUF506)
RAP-DB (Rice) LOC_Os03g58230.1 : plant-specific domain TIGR01615 family protein, expressed
MaizeGDB (Corn) Zm00025a045183 , Zm00025a008563 , Zm00025a016078
Brachypodium KQK12706
Barley HORVU5Hr1G105950.4 , HORVU5Hr1G105950.1 , HORVU5Hr1G105950.3 , HORVU5Hr1G105950.2
Wheat TraesCS4B02G278500 , TraesCS4A02G025500 , TraesCS5A02G439200 , TraesCS5D02G446400 , TraesCS4D02G277000 , TraesCS5B02G442200 , TraesCS5B02G442200
Populus -


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cDNA sequences
Sobic.001G057100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G097200 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
2 Sobic.009G245000 Glucose-1-phosphate adenylyltransferase large subunit(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
3 Sobic.009G231800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@auxin response factor 15, putative, expressed K14486: K14486, auxin response factor
4 Sobic.003G288800 phosphoesterase, putative, expressed K08073: bifunctional polynucleotide phosphatase/kinase
5 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
6 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
7 Sobic.008G002400 expressed protein -
8 Sobic.004G125800 tocopherol cyclase, chloroplast precursor, putative, expressed K09834: VTE1, tocopherol cyclase
9 Sobic.003G277400 violaxanthin de-epoxidase, putative, expressed -
10 Sobic.010G062500 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
11 Sobic.002G275200 PPR repeat containing protein, expressed -
12 Sobic.001G220000 PPR repeat containing protein, expressed -
13 Sobic.004G154800 expressed protein -
14 Sobic.005G002400 expressed protein -
15 Sobic.002G213400 expressed protein -
16 Sobic.009G259100 CCT motif family protein, expressed -
17 Sobic.002G374600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-oxoacyl-synthase, putative, expressed K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II
18 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
19 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
20 Sobic.007G016600 expressed protein -


Gene co-expression network
sample Sobic001G057100 Sobic001G057100 Sobic004G097200 Sobic004G097200 Sobic001G057100--Sobic004G097200 Sobic009G245000 Sobic009G245000 Sobic001G057100--Sobic009G245000 Sobic009G231800 Sobic009G231800 Sobic001G057100--Sobic009G231800 Sobic003G288800 Sobic003G288800 Sobic001G057100--Sobic003G288800 Sobic005G132000 Sobic005G132000 Sobic001G057100--Sobic005G132000 Sobic009G040400 Sobic009G040400 Sobic001G057100--Sobic009G040400 Sobic008G002400 Sobic008G002400 Sobic001G057100--Sobic008G002400 Sobic004G125800 Sobic004G125800 Sobic001G057100--Sobic004G125800 Sobic003G277400 Sobic003G277400 Sobic001G057100--Sobic003G277400 Sobic004G324100 Sobic004G324100 Sobic004G097200--Sobic004G324100 Sobic002G279700 Sobic002G279700 Sobic004G097200--Sobic002G279700 Sobic002G280100 Sobic002G280100 Sobic004G097200--Sobic002G280100 Sobic005G004500 Sobic005G004500 Sobic004G097200--Sobic005G004500 Sobic010G062500 Sobic010G062500 Sobic004G097200--Sobic010G062500 Sobic003G373600 Sobic003G373600 Sobic004G097200--Sobic003G373600 Sobic001G309900 Sobic001G309900 Sobic004G097200--Sobic001G309900 Sobic004G305900 Sobic004G305900 Sobic004G097200--Sobic004G305900 Sobic001G352200 Sobic001G352200 Sobic004G097200--Sobic001G352200 Sobic002G338800 Sobic002G338800 Sobic009G245000--Sobic002G338800 Sobic005G002400 Sobic005G002400 Sobic009G245000--Sobic005G002400 Sobic003G326000 Sobic003G326000 Sobic009G245000--Sobic003G326000 Sobic009G245000--Sobic008G002400 Sobic002G213400 Sobic002G213400 Sobic009G245000--Sobic002G213400 Sobic001G104900 Sobic001G104900 Sobic009G245000--Sobic001G104900 Sobic001G018000 Sobic001G018000 Sobic009G245000--Sobic001G018000 Sobic002G052000 Sobic002G052000 Sobic009G245000--Sobic002G052000 Sobic006G020300 Sobic006G020300 Sobic009G245000--Sobic006G020300 Sobic009G231800--Sobic005G132000 Sobic009G259100 Sobic009G259100 Sobic009G231800--Sobic009G259100 Sobic003G186800 Sobic003G186800 Sobic009G231800--Sobic003G186800 Sobic007G121300 Sobic007G121300 Sobic009G231800--Sobic007G121300 Sobic001G485100 Sobic001G485100 Sobic009G231800--Sobic001G485100 Sobic001G276300 Sobic001G276300 Sobic009G231800--Sobic001G276300 Sobic004G344600 Sobic004G344600 Sobic009G231800--Sobic004G344600 Sobic001G331600 Sobic001G331600 Sobic009G231800--Sobic001G331600 Sobic002G295100 Sobic002G295100 Sobic009G231800--Sobic002G295100 Sobic003G288800--Sobic005G132000 Sobic002G296500 Sobic002G296500 Sobic003G288800--Sobic002G296500 Sobic004G271600 Sobic004G271600 Sobic003G288800--Sobic004G271600 Sobic003G288800--Sobic002G213400 Sobic003G288800--Sobic009G259100 Sobic006G120301 Sobic006G120301 Sobic003G288800--Sobic006G120301 Sobic005G201000 Sobic005G201000 Sobic003G288800--Sobic005G201000 Sobic002G294400 Sobic002G294400 Sobic003G288800--Sobic002G294400 Sobic001G492600 Sobic001G492600 Sobic003G288800--Sobic001G492600 Sobic003G029500 Sobic003G029500 Sobic005G132000--Sobic003G029500 Sobic005G132000--Sobic005G201000 Sobic005G132000--Sobic009G259100 Sobic005G132000--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic009G040400--Sobic007G010800 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic009G040400--Sobic005G201000 Sobic009G040400--Sobic003G029500 Sobic010G092350 Sobic010G092350 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic002G356900 Sobic002G356900 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic008G002400--Sobic005G002400 Sobic008G002400--Sobic003G326000 Sobic001G181100 Sobic001G181100 Sobic008G002400--Sobic001G181100 Sobic010G271800 Sobic010G271800 Sobic008G002400--Sobic010G271800 Sobic008G002400--Sobic006G020300 Sobic001G112900 Sobic001G112900 Sobic008G002400--Sobic001G112900 Sobic007G016600 Sobic007G016600 Sobic008G002400--Sobic007G016600 Sobic004G190100 Sobic004G190100 Sobic008G002400--Sobic004G190100 Sobic010G113200 Sobic010G113200 Sobic008G002400--Sobic010G113200 Sobic004G125800--Sobic001G018000 Sobic001G104700 Sobic001G104700 Sobic004G125800--Sobic001G104700 Sobic002G030900 Sobic002G030900 Sobic004G125800--Sobic002G030900 Sobic010G101000 Sobic010G101000 Sobic004G125800--Sobic010G101000 Sobic009G225600 Sobic009G225600 Sobic004G125800--Sobic009G225600 Sobic007G124500 Sobic007G124500 Sobic004G125800--Sobic007G124500 Sobic001G411100 Sobic001G411100 Sobic004G125800--Sobic001G411100 Sobic002G351200 Sobic002G351200 Sobic004G125800--Sobic002G351200 Sobic001G046000 Sobic001G046000 Sobic004G125800--Sobic001G046000 Sobic003G277400--Sobic007G010800 Sobic003G277400--Sobic009G040400 Sobic004G154700 Sobic004G154700 Sobic003G277400--Sobic004G154700 Sobic002G258400 Sobic002G258400 Sobic003G277400--Sobic002G258400 Sobic004G154800 Sobic004G154800 Sobic003G277400--Sobic004G154800 Sobic001G220000 Sobic001G220000 Sobic003G277400--Sobic001G220000 Sobic003G185600 Sobic003G185600 Sobic003G277400--Sobic003G185600 Sobic006G108200 Sobic006G108200 Sobic003G277400--Sobic006G108200 Sobic003G277400--Sobic002G356900
Octagon: transcription factors


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