Gene annotation
Transcriptome id Sobic.009G231800.2,Sobic.009G231800.1
Synonym ARF3, auxin response factor, SbARF21, Sb09g028450, ETT
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf" (PubMedID : 20499123)
auxin response factor 15, putative, expressed
UniProt A0A1Z5R3R8 , C5YVJ4
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF5
NCBI CDD -
KEGG Orthology K14486; K14486, auxin response factor
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G33860 : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
RAP-DB (Rice) LOC_Os05g48870.1 : auxin response factor 15, putative, expressed
MaizeGDB (Corn) Zm00025a028102 , Zm00025a044563
Brachypodium PNT70708 , PNT70709 , PNT70707 , KQK04890 , KQK04891 , KQK04887 , KQK04889 , KQK04888 , KQK09126
Barley HORVU2Hr1G121110.34 , HORVU2Hr1G121110.36 , HORVU1Hr1G087460.8 , HORVU1Hr1G087460.9 , HORVU1Hr1G087460.4 , HORVU1Hr1G087460.5 , HORVU1Hr1G087460.6 , HORVU1Hr1G087460.7 , HORVU1Hr1G087460.1 , HORVU1Hr1G087460.2 , HORVU1Hr1G087460.3 , HORVU1Hr1G087460.18 , HORVU1Hr1G087460.19 , HORVU1Hr1G087460.16 , HORVU1Hr1G087460.17 , HORVU1Hr1G087460.14 , HORVU1Hr1G087460.15 , HORVU1Hr1G087460.12 , HORVU1Hr1G087460.13 , HORVU1Hr1G087460.10 , HORVU1Hr1G087460.11 , HORVU1Hr1G087460.27 , HORVU1Hr1G087460.26 , HORVU1Hr1G087460.25 , HORVU1Hr1G087460.24 , HORVU1Hr1G087460.23 , HORVU1Hr1G087460.22 , HORVU1Hr1G087460.21 , HORVU1Hr1G087460.20 , HORVU1Hr1G087460.29 , HORVU1Hr1G087460.28 , HORVU2Hr1G121110.29 , HORVU2Hr1G121110.28 , HORVU2Hr1G121110.27 , HORVU2Hr1G121110.26 , HORVU1Hr1G087460.30 , HORVU1Hr1G087460.31 , HORVU1Hr1G087460.32 , HORVU1Hr1G087460.33 , HORVU2Hr1G121110.35 , HORVU2Hr1G121110.30 , HORVU2Hr1G121110.31 , HORVU2Hr1G121110.32 , HORVU2Hr1G121110.33
Wheat TraesCS3A02G246000 , TraesCS3A02G246000 , TraesCS1B02G424700 , TraesCS3D02G245400 , TraesCS2A02G547800 , TraesCS2B02G578500 , TraesCS1A02G396400 , TraesCS3D02G245400 , TraesCS3B02G273400 , TraesCS3B02G273400 , TraesCS2D02G548900 , TraesCS1D02G404400 , TraesCS3B02G273400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
2 Sobic.009G259100 CCT motif family protein, expressed -
3 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
4 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
5 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G276300 peptide transporter PTR2, putative, expressed -
7 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
8 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
9 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
10 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
11 Sobic.003G304300 expressed protein -
12 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
13 Sobic.004G125800 tocopherol cyclase, chloroplast precursor, putative, expressed K09834: VTE1, tocopherol cyclase
14 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G282800 AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
16 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
17 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
19 Sobic.004G113100 "OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659881)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
20 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -


Gene co-expression network
sample Sobic009G231800 Sobic009G231800 Sobic005G132000 Sobic005G132000 Sobic009G231800--Sobic005G132000 Sobic009G259100 Sobic009G259100 Sobic009G231800--Sobic009G259100 Sobic003G186800 Sobic003G186800 Sobic009G231800--Sobic003G186800 Sobic007G121300 Sobic007G121300 Sobic009G231800--Sobic007G121300 Sobic001G485100 Sobic001G485100 Sobic009G231800--Sobic001G485100 Sobic001G276300 Sobic001G276300 Sobic009G231800--Sobic001G276300 Sobic004G344600 Sobic004G344600 Sobic009G231800--Sobic004G344600 Sobic001G331600 Sobic001G331600 Sobic009G231800--Sobic001G331600 Sobic002G295100 Sobic002G295100 Sobic009G231800--Sobic002G295100 Sobic003G029500 Sobic003G029500 Sobic005G132000--Sobic003G029500 Sobic005G201000 Sobic005G201000 Sobic005G132000--Sobic005G201000 Sobic005G132000--Sobic009G259100 Sobic009G040400 Sobic009G040400 Sobic005G132000--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic002G275100 Sobic002G275100 Sobic009G259100--Sobic002G275100 Sobic003G380200 Sobic003G380200 Sobic009G259100--Sobic003G380200 Sobic009G259100--Sobic004G344600 Sobic004G267700 Sobic004G267700 Sobic009G259100--Sobic004G267700 Sobic010G100900 Sobic010G100900 Sobic009G259100--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic009G259100--Sobic003G304300 Sobic009G259100--Sobic007G121300 Sobic002G351200 Sobic002G351200 Sobic009G259100--Sobic002G351200 Sobic002G161400 Sobic002G161400 Sobic009G259100--Sobic002G161400 Sobic003G186800--Sobic003G380200 Sobic003G186800--Sobic003G304300 Sobic009G225600 Sobic009G225600 Sobic003G186800--Sobic009G225600 Sobic006G191500 Sobic006G191500 Sobic003G186800--Sobic006G191500 Sobic003G186800--Sobic001G485100 Sobic010G101000 Sobic010G101000 Sobic003G186800--Sobic010G101000 Sobic004G268400 Sobic004G268400 Sobic003G186800--Sobic004G268400 Sobic002G047400 Sobic002G047400 Sobic003G186800--Sobic002G047400 Sobic003G186800--Sobic004G267700 Sobic004G128900 Sobic004G128900 Sobic007G121300--Sobic004G128900 Sobic007G121300--Sobic002G161400 Sobic007G121300--Sobic004G344600 Sobic007G121300--Sobic001G331600 Sobic003G340300 Sobic003G340300 Sobic007G121300--Sobic003G340300 Sobic007G121300--Sobic009G259100 Sobic007G121300--Sobic006G191500 Sobic007G121300--Sobic001G485100 Sobic004G035100 Sobic004G035100 Sobic007G121300--Sobic004G035100 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G046000 Sobic001G046000 Sobic001G485100--Sobic001G046000 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600 Sobic007G135800 Sobic007G135800 Sobic001G276300--Sobic007G135800 Sobic001G509200 Sobic001G509200 Sobic001G276300--Sobic001G509200 Sobic005G028800 Sobic005G028800 Sobic001G276300--Sobic005G028800 Sobic006G213700 Sobic006G213700 Sobic001G276300--Sobic006G213700 Sobic001G276300--Sobic003G380200 Sobic006G226601 Sobic006G226601 Sobic001G276300--Sobic006G226601 Sobic010G231500 Sobic010G231500 Sobic001G276300--Sobic010G231500 Sobic007G169100 Sobic007G169100 Sobic001G276300--Sobic007G169100 Sobic002G225100 Sobic002G225100 Sobic001G276300--Sobic002G225100 Sobic004G344600--Sobic002G161400 Sobic001G112900 Sobic001G112900 Sobic004G344600--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G344600--Sobic004G128900 Sobic009G246400 Sobic009G246400 Sobic004G344600--Sobic009G246400 Sobic001G331600--Sobic001G485100 Sobic001G331600--Sobic004G128900 Sobic004G153900 Sobic004G153900 Sobic001G331600--Sobic004G153900 Sobic001G331600--Sobic002G161400 Sobic001G331600--Sobic001G046000 Sobic004G312600 Sobic004G312600 Sobic001G331600--Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic001G331600--Sobic007G227100 Sobic001G331600--Sobic006G191500 Sobic001G331600--Sobic004G344600 Sobic004G323400 Sobic004G323400 Sobic002G295100--Sobic004G323400 Sobic002G295100--Sobic001G331600 Sobic002G295100--Sobic001G485100 Sobic002G293500 Sobic002G293500 Sobic002G295100--Sobic002G293500 Sobic002G295100--Sobic004G312600 Sobic002G295100--Sobic001G046000 Sobic002G295100--Sobic009G225600 Sobic006G257800 Sobic006G257800 Sobic002G295100--Sobic006G257800 Sobic003G162400 Sobic003G162400 Sobic002G295100--Sobic003G162400
Octagon: transcription factors


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