Gene annotation
Transcriptome id Sobic.001G282800.1
Synonym Sb01g027820
Functional annotation AMP-binding domain containing protein, expressed
UniProt A0A1B6QLK8 , C6JRP8
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF253
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G19010 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os08g04770.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007071 , Zm00025a003561
Brachypodium PNT67979 , PNT67980 , KQJ97991 , KQJ97992
Barley HORVU1Hr1G051190.7 , HORVU1Hr1G051190.6 , HORVU1Hr1G051190.5 , HORVU1Hr1G051190.4 , HORVU1Hr1G051190.2 , HORVU1Hr1G051190.9 , HORVU1Hr1G051190.8 , HORVU1Hr1G051190.22 , HORVU1Hr1G051190.20 , HORVU1Hr1G051190.19 , HORVU1Hr1G051190.18 , HORVU1Hr1G051190.17 , HORVU1Hr1G051190.16 , HORVU1Hr1G051190.15 , HORVU1Hr1G051190.14 , HORVU1Hr1G051190.13 , HORVU1Hr1G051190.12 , HORVU1Hr1G051190.11 , HORVU1Hr1G051190.10 , HORVU1Hr1G051190.3
Wheat TraesCS1A02G196700 , TraesCS1D02G200200 , TraesCS1B02G211300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
2 Sobic.001G411200 cat eye syndrome critical region protein 5 precursor, putative, expressed -
3 Sobic.004G154700 choline/ethanolamine kinase, putative, expressed -
4 Sobic.002G004600 Ser/Thr protein phosphatase family protein, putative, expressed -
5 Sobic.009G231800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@auxin response factor 15, putative, expressed K14486: K14486, auxin response factor
6 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
7 Sobic.004G151800 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
8 Sobic.004G143300 high mobility group, putative, expressed -
9 Sobic.002G407000 4-alpha-glucanotransferase, putative, expressed K00705: 4-alpha-glucanotransferase
10 Sobic.002G252300 expressed protein -
11 Sobic.004G206100 transmembrane protein 17, putative, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
12 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
13 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
14 Sobic.009G163950 - -
15 Sobic.008G180800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
16 Sobic.010G150100 expressed protein -
17 Sobic.001G261545 - K01669: deoxyribodipyrimidine photo-lyase
18 Sobic.004G125800 tocopherol cyclase, chloroplast precursor, putative, expressed K09834: VTE1, tocopherol cyclase
19 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
20 Sobic.004G303100 expressed protein -


Gene co-expression network
sample Sobic001G282800 Sobic001G282800 Sobic003G150500 Sobic003G150500 Sobic001G282800--Sobic003G150500 Sobic001G411200 Sobic001G411200 Sobic001G282800--Sobic001G411200 Sobic004G154700 Sobic004G154700 Sobic001G282800--Sobic004G154700 Sobic002G004600 Sobic002G004600 Sobic001G282800--Sobic002G004600 Sobic009G231800 Sobic009G231800 Sobic001G282800--Sobic009G231800 Sobic002G043800 Sobic002G043800 Sobic001G282800--Sobic002G043800 Sobic004G151800 Sobic004G151800 Sobic001G282800--Sobic004G151800 Sobic004G143300 Sobic004G143300 Sobic001G282800--Sobic004G143300 Sobic002G407000 Sobic002G407000 Sobic001G282800--Sobic002G407000 Sobic003G150500--Sobic002G043800 Sobic003G298200 Sobic003G298200 Sobic003G150500--Sobic003G298200 Sobic003G107500 Sobic003G107500 Sobic003G150500--Sobic003G107500 Sobic010G150100 Sobic010G150100 Sobic003G150500--Sobic010G150100 Sobic003G150500--Sobic001G282800 Sobic003G150500--Sobic001G411200 Sobic005G176100 Sobic005G176100 Sobic003G150500--Sobic005G176100 Sobic004G151300 Sobic004G151300 Sobic003G150500--Sobic004G151300 Sobic004G086300 Sobic004G086300 Sobic003G150500--Sobic004G086300 Sobic001G411200--Sobic002G407000 Sobic001G411200--Sobic004G151800 Sobic001G411200--Sobic004G151300 Sobic001G345100 Sobic001G345100 Sobic001G411200--Sobic001G345100 Sobic001G411200--Sobic003G150500 Sobic002G252300 Sobic002G252300 Sobic001G411200--Sobic002G252300 Sobic001G411200--Sobic010G150100 Sobic010G134000 Sobic010G134000 Sobic001G411200--Sobic010G134000 Sobic001G411200--Sobic004G143300 Sobic003G277400 Sobic003G277400 Sobic004G154700--Sobic003G277400 Sobic009G040400 Sobic009G040400 Sobic004G154700--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic004G154700--Sobic007G010800 Sobic005G132000 Sobic005G132000 Sobic004G154700--Sobic005G132000 Sobic005G038500 Sobic005G038500 Sobic004G154700--Sobic005G038500 Sobic003G011900 Sobic003G011900 Sobic004G154700--Sobic003G011900 Sobic003G057233 Sobic003G057233 Sobic004G154700--Sobic003G057233 Sobic003G105900 Sobic003G105900 Sobic004G154700--Sobic003G105900 Sobic004G154700--Sobic001G282800 Sobic002G004600--Sobic001G282800 Sobic003G310300 Sobic003G310300 Sobic002G004600--Sobic003G310300 Sobic002G004600--Sobic003G150500 Sobic002G004600--Sobic002G407000 Sobic002G004600--Sobic010G134000 Sobic002G004600--Sobic002G043800 Sobic002G004600--Sobic003G107500 Sobic001G116500 Sobic001G116500 Sobic002G004600--Sobic001G116500 Sobic009G200200 Sobic009G200200 Sobic002G004600--Sobic009G200200 Sobic009G231800--Sobic005G132000 Sobic009G259100 Sobic009G259100 Sobic009G231800--Sobic009G259100 Sobic003G186800 Sobic003G186800 Sobic009G231800--Sobic003G186800 Sobic007G121300 Sobic007G121300 Sobic009G231800--Sobic007G121300 Sobic001G485100 Sobic001G485100 Sobic009G231800--Sobic001G485100 Sobic001G276300 Sobic001G276300 Sobic009G231800--Sobic001G276300 Sobic004G344600 Sobic004G344600 Sobic009G231800--Sobic004G344600 Sobic001G331600 Sobic001G331600 Sobic009G231800--Sobic001G331600 Sobic002G295100 Sobic002G295100 Sobic009G231800--Sobic002G295100 Sobic002G043800--Sobic010G150100 Sobic002G043800--Sobic003G107500 Sobic004G146600 Sobic004G146600 Sobic002G043800--Sobic004G146600 Sobic008G167600 Sobic008G167600 Sobic002G043800--Sobic008G167600 Sobic002G043800--Sobic004G151300 Sobic002G043800--Sobic003G150500 Sobic004G312600 Sobic004G312600 Sobic002G043800--Sobic004G312600 Sobic003G271400 Sobic003G271400 Sobic002G043800--Sobic003G271400 Sobic002G043800--Sobic002G295100 Sobic004G151800--Sobic001G345100 Sobic001G132600 Sobic001G132600 Sobic004G151800--Sobic001G132600 Sobic006G153400 Sobic006G153400 Sobic004G151800--Sobic006G153400 Sobic004G082300 Sobic004G082300 Sobic004G151800--Sobic004G082300 Sobic004G151800--Sobic004G143300 Sobic001G178250 Sobic001G178250 Sobic004G151800--Sobic001G178250 Sobic009G256100 Sobic009G256100 Sobic004G151800--Sobic009G256100 Sobic003G127800 Sobic003G127800 Sobic004G151800--Sobic003G127800 Sobic007G006400 Sobic007G006400 Sobic004G151800--Sobic007G006400 Sobic004G143300--Sobic001G345100 Sobic007G058100 Sobic007G058100 Sobic004G143300--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic004G143300--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic004G143300--Sobic008G129900 Sobic006G235400 Sobic006G235400 Sobic004G143300--Sobic006G235400 Sobic001G217900 Sobic001G217900 Sobic004G143300--Sobic001G217900 Sobic006G161500 Sobic006G161500 Sobic004G143300--Sobic006G161500 Sobic001G263100 Sobic001G263100 Sobic004G143300--Sobic001G263100 Sobic004G128900 Sobic004G128900 Sobic004G143300--Sobic004G128900 Sobic001G201900 Sobic001G201900 Sobic002G407000--Sobic001G201900 Sobic007G113600 Sobic007G113600 Sobic002G407000--Sobic007G113600 Sobic001G178100 Sobic001G178100 Sobic002G407000--Sobic001G178100 Sobic002G407000--Sobic001G411200 Sobic003G403300 Sobic003G403300 Sobic002G407000--Sobic003G403300 Sobic002G098900 Sobic002G098900 Sobic002G407000--Sobic002G098900 Sobic002G407000--Sobic010G134000 Sobic001G067700 Sobic001G067700 Sobic002G407000--Sobic001G067700 Sobic003G010800 Sobic003G010800 Sobic002G407000--Sobic003G010800
Octagon: transcription factors


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