Gene annotation
Transcriptome id Sobic.002G252300.1,Sobic.002G252300.2
Synonym Sb02g028790
Functional annotation expressed protein
UniProt C5X4J5 , A0A1W0W5P5
Pfam PF04654
Panther DB PTHR31881 PTHR31881:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G31330 : Protein of unknown function, DUF599
RAP-DB (Rice) LOC_Os09g32100.1 : expressed protein
MaizeGDB (Corn) Zm00025a005147 , Zm00025a047496
Brachypodium KQJ90821
Barley HORVU5Hr1G074450.3 , HORVU5Hr1G074450.2 , HORVU5Hr1G074450.1 , HORVU5Hr1G074450.4 , HORVU7Hr1G051650.1
Wheat TraesCS5A02G273300 , TraesCS5D02G280800
Populus -


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cDNA sequences
Sobic.002G252300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G151800 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
2 Sobic.001G132600 histidine acid phosphatase, putative, expressed K13024: PPIP5K, inositol-hexakisphosphate/diphosphoinositol-pentakisphosphate 1-kinase
3 Sobic.001G411200 cat eye syndrome critical region protein 5 precursor, putative, expressed -
4 Sobic.004G206100 transmembrane protein 17, putative, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
5 Sobic.004G082300 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
7 Sobic.004G268000 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
8 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
9 Sobic.008G149100 B3 DNA binding domain containing protein, expressed -
10 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
11 Sobic.001G261545 - K01669: deoxyribodipyrimidine photo-lyase
12 Sobic.008G180800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
13 Sobic.003G101000 phosphate transporter 1, putative, expressed -
14 Sobic.009G163950 - -
15 Sobic.001G289500 kinase, pfkB family, putative, expressed -
16 Sobic.003G028900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.004G151300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF803 domain containing, putative, expressed -
18 Sobic.002G407000 4-alpha-glucanotransferase, putative, expressed K00705: 4-alpha-glucanotransferase
19 Sobic.007G006400 - -
20 Sobic.004G113100 "OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659881)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase


Gene co-expression network
sample Sobic002G252300 Sobic002G252300 Sobic004G151800 Sobic004G151800 Sobic002G252300--Sobic004G151800 Sobic001G132600 Sobic001G132600 Sobic002G252300--Sobic001G132600 Sobic001G411200 Sobic001G411200 Sobic002G252300--Sobic001G411200 Sobic004G206100 Sobic004G206100 Sobic002G252300--Sobic004G206100 Sobic004G082300 Sobic004G082300 Sobic002G252300--Sobic004G082300 Sobic001G345100 Sobic001G345100 Sobic002G252300--Sobic001G345100 Sobic004G268000 Sobic004G268000 Sobic002G252300--Sobic004G268000 Sobic010G101000 Sobic010G101000 Sobic002G252300--Sobic010G101000 Sobic008G149100 Sobic008G149100 Sobic002G252300--Sobic008G149100 Sobic004G151800--Sobic001G345100 Sobic004G151800--Sobic001G132600 Sobic006G153400 Sobic006G153400 Sobic004G151800--Sobic006G153400 Sobic004G151800--Sobic004G082300 Sobic004G143300 Sobic004G143300 Sobic004G151800--Sobic004G143300 Sobic001G178250 Sobic001G178250 Sobic004G151800--Sobic001G178250 Sobic009G256100 Sobic009G256100 Sobic004G151800--Sobic009G256100 Sobic003G127800 Sobic003G127800 Sobic004G151800--Sobic003G127800 Sobic007G006400 Sobic007G006400 Sobic004G151800--Sobic007G006400 Sobic001G132600--Sobic004G151800 Sobic001G132600--Sobic003G127800 Sobic004G059800 Sobic004G059800 Sobic001G132600--Sobic004G059800 Sobic004G154200 Sobic004G154200 Sobic001G132600--Sobic004G154200 Sobic001G132600--Sobic004G082300 Sobic001G132600--Sobic006G153400 Sobic001G132600--Sobic007G006400 Sobic009G129300 Sobic009G129300 Sobic001G132600--Sobic009G129300 Sobic004G112100 Sobic004G112100 Sobic001G132600--Sobic004G112100 Sobic002G407000 Sobic002G407000 Sobic001G411200--Sobic002G407000 Sobic001G411200--Sobic004G151800 Sobic004G151300 Sobic004G151300 Sobic001G411200--Sobic004G151300 Sobic001G411200--Sobic001G345100 Sobic003G150500 Sobic003G150500 Sobic001G411200--Sobic003G150500 Sobic001G411200--Sobic002G252300 Sobic010G150100 Sobic010G150100 Sobic001G411200--Sobic010G150100 Sobic010G134000 Sobic010G134000 Sobic001G411200--Sobic010G134000 Sobic001G411200--Sobic004G143300 Sobic001G015200 Sobic001G015200 Sobic004G206100--Sobic001G015200 Sobic001G436400 Sobic001G436400 Sobic004G206100--Sobic001G436400 Sobic007G166300 Sobic007G166300 Sobic004G206100--Sobic007G166300 Sobic008G088821 Sobic008G088821 Sobic004G206100--Sobic008G088821 Sobic007G181400 Sobic007G181400 Sobic004G206100--Sobic007G181400 Sobic005G028800 Sobic005G028800 Sobic004G206100--Sobic005G028800 Sobic004G305900 Sobic004G305900 Sobic004G206100--Sobic004G305900 Sobic009G119300 Sobic009G119300 Sobic004G206100--Sobic009G119300 Sobic006G066800 Sobic006G066800 Sobic004G206100--Sobic006G066800 Sobic007G058100 Sobic007G058100 Sobic004G082300--Sobic007G058100 Sobic004G082300--Sobic009G256100 Sobic008G129900 Sobic008G129900 Sobic004G082300--Sobic008G129900 Sobic009G038701 Sobic009G038701 Sobic004G082300--Sobic009G038701 Sobic001G258200 Sobic001G258200 Sobic004G082300--Sobic001G258200 Sobic002G382700 Sobic002G382700 Sobic004G082300--Sobic002G382700 Sobic003G097600 Sobic003G097600 Sobic004G082300--Sobic003G097600 Sobic001G263100 Sobic001G263100 Sobic004G082300--Sobic001G263100 Sobic004G082300--Sobic006G153400 Sobic001G345100--Sobic004G143300 Sobic001G345100--Sobic007G058100 Sobic001G536700 Sobic001G536700 Sobic001G345100--Sobic001G536700 Sobic001G345100--Sobic008G129900 Sobic010G231300 Sobic010G231300 Sobic001G345100--Sobic010G231300 Sobic008G033000 Sobic008G033000 Sobic001G345100--Sobic008G033000 Sobic006G235400 Sobic006G235400 Sobic001G345100--Sobic006G235400 Sobic001G345100--Sobic001G263100 Sobic001G345100--Sobic001G258200 Sobic004G305800 Sobic004G305800 Sobic004G268000--Sobic004G305800 Sobic004G268000--Sobic009G129300 Sobic001G491000 Sobic001G491000 Sobic004G268000--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic004G268000--Sobic002G275300 Sobic010G201700 Sobic010G201700 Sobic004G268000--Sobic010G201700 Sobic001G020100 Sobic001G020100 Sobic004G268000--Sobic001G020100 Sobic006G238200 Sobic006G238200 Sobic004G268000--Sobic006G238200 Sobic002G370600 Sobic002G370600 Sobic004G268000--Sobic002G370600 Sobic010G181300 Sobic010G181300 Sobic004G268000--Sobic010G181300 Sobic004G267700 Sobic004G267700 Sobic010G101000--Sobic004G267700 Sobic009G225600 Sobic009G225600 Sobic010G101000--Sobic009G225600 Sobic002G030900 Sobic002G030900 Sobic010G101000--Sobic002G030900 Sobic003G186800 Sobic003G186800 Sobic010G101000--Sobic003G186800 Sobic002G351200 Sobic002G351200 Sobic010G101000--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic010G101000--Sobic001G018000 Sobic010G104700 Sobic010G104700 Sobic010G101000--Sobic010G104700 Sobic004G268400 Sobic004G268400 Sobic010G101000--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic010G101000--Sobic003G304300 Sobic002G047400 Sobic002G047400 Sobic008G149100--Sobic002G047400 Sobic001G046000 Sobic001G046000 Sobic008G149100--Sobic001G046000 Sobic001G499100 Sobic001G499100 Sobic008G149100--Sobic001G499100 Sobic003G228300 Sobic003G228300 Sobic008G149100--Sobic003G228300 Sobic001G509200 Sobic001G509200 Sobic008G149100--Sobic001G509200 Sobic004G153900 Sobic004G153900 Sobic008G149100--Sobic004G153900 Sobic008G149100--Sobic010G104700 Sobic001G393300 Sobic001G393300 Sobic008G149100--Sobic001G393300 Sobic008G149100--Sobic010G101000
Octagon: transcription factors


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