Gene annotation
Transcriptome id Sobic.008G180800.1
Synonym phytoene synthase 2, Sb08g022310, SbPSY2, PSY
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
carotenoid biosynthesi (PubMedID : 18162592)
phytoene synthase, chloroplast precursor, putative, expressed
UniProt C5YSI5
Pfam PF00494
Panther DB PTHR31480 PTHR31480:SF4
NCBI CDD KOG4411; Phytoene/squalene synthetase
KEGG Orthology K02291; 15-cis-phytoene synthase
Gene Ontology GO:0016740; transferase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G17230 : PHYTOENE SYNTHASE
RAP-DB (Rice) LOC_Os12g43130.1 : phytoene synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039658 , Zm00025a036883
Brachypodium KQJ85699
Barley HORVU5Hr1G005740.7 , HORVU5Hr1G005740.6 , HORVU5Hr1G005740.5 , HORVU5Hr1G005740.4 , HORVU5Hr1G005740.3 , HORVU5Hr1G005740.2 , HORVU5Hr1G005740.1 , HORVU5Hr1G005740.8
Wheat TraesCS1B02G429900 , TraesCS1B02G429900 , TraesCS1B02G429900 , TraesCS5B02G017900 , TraesCS5D02G026000 , TraesCS5A02G020900
Populus -


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cDNA sequences
Sobic.008G180800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
2 Sobic.002G116000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Granule -bound starch synthase 1b (Os)(PubMedID : 27208977)@"GbssIIa(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659853)@starch synthase, putative, expressed K13679: granule-bound starch synthase
3 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
4 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
5 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
7 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
8 Sobic.008G149100 B3 DNA binding domain containing protein, expressed -
9 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
10 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G020300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
12 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
13 Sobic.003G304300 expressed protein -
14 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
15 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
16 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
17 Sobic.002G030900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
19 Sobic.001G200000 disease resistance RPP13-like protein 1, putative, expressed -
20 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -


Gene co-expression network
sample Sobic008G180800 Sobic008G180800 Sobic010G104700 Sobic010G104700 Sobic008G180800--Sobic010G104700 Sobic002G116000 Sobic002G116000 Sobic008G180800--Sobic002G116000 Sobic010G101000 Sobic010G101000 Sobic008G180800--Sobic010G101000 Sobic003G428600 Sobic003G428600 Sobic008G180800--Sobic003G428600 Sobic001G046000 Sobic001G046000 Sobic008G180800--Sobic001G046000 Sobic002G047400 Sobic002G047400 Sobic008G180800--Sobic002G047400 Sobic009G225600 Sobic009G225600 Sobic008G180800--Sobic009G225600 Sobic008G149100 Sobic008G149100 Sobic008G180800--Sobic008G149100 Sobic003G186800 Sobic003G186800 Sobic008G180800--Sobic003G186800 Sobic010G104700--Sobic001G046000 Sobic003G304300 Sobic003G304300 Sobic010G104700--Sobic003G304300 Sobic010G104700--Sobic010G101000 Sobic004G344600 Sobic004G344600 Sobic010G104700--Sobic004G344600 Sobic004G153900 Sobic004G153900 Sobic010G104700--Sobic004G153900 Sobic010G104700--Sobic009G225600 Sobic002G161400 Sobic002G161400 Sobic010G104700--Sobic002G161400 Sobic010G104700--Sobic008G180800 Sobic002G351200 Sobic002G351200 Sobic010G104700--Sobic002G351200 Sobic002G116000--Sobic008G180800 Sobic002G116000--Sobic008G149100 Sobic007G046950 Sobic007G046950 Sobic002G116000--Sobic007G046950 Sobic002G116000--Sobic002G047400 Sobic001G104600 Sobic001G104600 Sobic002G116000--Sobic001G104600 Sobic005G056400 Sobic005G056400 Sobic002G116000--Sobic005G056400 Sobic002G116000--Sobic010G104700 Sobic002G116000--Sobic010G101000 Sobic002G116000--Sobic001G046000 Sobic004G267700 Sobic004G267700 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic002G030900 Sobic002G030900 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic010G101000--Sobic001G018000 Sobic010G101000--Sobic010G104700 Sobic004G268400 Sobic004G268400 Sobic010G101000--Sobic004G268400 Sobic010G101000--Sobic003G304300 Sobic003G428600--Sobic003G304300 Sobic003G428600--Sobic010G101000 Sobic003G428600--Sobic003G186800 Sobic003G428600--Sobic010G104700 Sobic003G428600--Sobic002G351200 Sobic003G428600--Sobic009G225600 Sobic003G428600--Sobic001G018000 Sobic001G112900 Sobic001G112900 Sobic003G428600--Sobic001G112900 Sobic003G428600--Sobic004G268400 Sobic001G046000--Sobic009G225600 Sobic001G485100 Sobic001G485100 Sobic001G046000--Sobic001G485100 Sobic001G046000--Sobic010G104700 Sobic001G046000--Sobic002G047400 Sobic001G046000--Sobic003G186800 Sobic001G046000--Sobic010G101000 Sobic006G090100 Sobic006G090100 Sobic001G046000--Sobic006G090100 Sobic001G046000--Sobic004G153900 Sobic006G191500 Sobic006G191500 Sobic001G046000--Sobic006G191500 Sobic002G047400--Sobic009G225600 Sobic002G047400--Sobic008G149100 Sobic002G047400--Sobic003G186800 Sobic002G047400--Sobic001G046000 Sobic003G228300 Sobic003G228300 Sobic002G047400--Sobic003G228300 Sobic001G015200 Sobic001G015200 Sobic002G047400--Sobic001G015200 Sobic002G047400--Sobic010G101000 Sobic001G509200 Sobic001G509200 Sobic002G047400--Sobic001G509200 Sobic002G047400--Sobic001G485100 Sobic009G225600--Sobic001G046000 Sobic009G225600--Sobic010G101000 Sobic009G225600--Sobic003G186800 Sobic009G225600--Sobic002G047400 Sobic009G225600--Sobic001G485100 Sobic009G225600--Sobic010G104700 Sobic009G225600--Sobic002G351200 Sobic009G225600--Sobic001G015200 Sobic003G380200 Sobic003G380200 Sobic009G225600--Sobic003G380200 Sobic008G149100--Sobic002G047400 Sobic008G149100--Sobic001G046000 Sobic001G499100 Sobic001G499100 Sobic008G149100--Sobic001G499100 Sobic008G149100--Sobic003G228300 Sobic008G149100--Sobic001G509200 Sobic008G149100--Sobic004G153900 Sobic008G149100--Sobic010G104700 Sobic001G393300 Sobic001G393300 Sobic008G149100--Sobic001G393300 Sobic008G149100--Sobic010G101000 Sobic003G186800--Sobic003G380200 Sobic003G186800--Sobic003G304300 Sobic003G186800--Sobic009G225600 Sobic003G186800--Sobic006G191500 Sobic003G186800--Sobic001G485100 Sobic003G186800--Sobic010G101000 Sobic003G186800--Sobic004G268400 Sobic003G186800--Sobic002G047400 Sobic003G186800--Sobic004G267700
Octagon: transcription factors


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