Gene annotation
Transcriptome id Sobic.004G113100.2,Sobic.004G113100.1
Synonym SPMS, ATSPDS3, Sb04g009230, SPDS3
Functional annotation "OsSPMS1(Ortholog in rice:Tao et al., 2018)" (PubMedID : 31659881)
spermidine synthase, putative, expressed
UniProt C5XZ59
Pfam PF01564
Panther DB PTHR11558 PTHR11558:SF25
NCBI CDD KOG1562; Spermidine synthase
KEGG Orthology K00797; speE, SRM, spermidine synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53120 : spermidine synthase 3
RAP-DB (Rice) LOC_Os02g15550.2 : spermidine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a040209 , Zm00025a018739 , Zm00025a034434
Brachypodium KQJ94266 , KQK18093 , KQK18092 , KQK18091 , KQK18094
Barley HORVU7Hr1G079430.18 , HORVU7Hr1G079430.19 , HORVU7Hr1G079430.16 , HORVU7Hr1G079430.17 , HORVU7Hr1G079430.14 , HORVU7Hr1G079430.15 , HORVU7Hr1G079430.12 , HORVU7Hr1G079430.13 , HORVU7Hr1G079430.10 , HORVU7Hr1G079430.11 , HORVU5Hr1G052890.8 , HORVU5Hr1G052890.2 , HORVU5Hr1G052890.1 , HORVU5Hr1G052890.7 , HORVU5Hr1G052890.6 , HORVU5Hr1G052890.5 , HORVU5Hr1G052890.4 , HORVU7Hr1G079430.24 , HORVU7Hr1G079430.23 , HORVU7Hr1G079430.22 , HORVU7Hr1G079430.21 , HORVU7Hr1G079430.20 , HORVU7Hr1G079430.8 , HORVU7Hr1G079430.9 , HORVU7Hr1G079430.4 , HORVU7Hr1G079430.5 , HORVU7Hr1G079430.6 , HORVU7Hr1G079430.7 , HORVU7Hr1G079430.2 , HORVU7Hr1G079430.3
Wheat TraesCS5A02G172600 , TraesCS7B02G232700 , TraesCS5B02G169900 , TraesCS5B02G169900 , TraesCS5D02G177100 , TraesCS7D02G328500 , TraesCS7D02G328500 , TraesCS7A02G350100
Populus -


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cDNA sequences
Sobic.004G113100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
2 Sobic.004G125800 tocopherol cyclase, chloroplast precursor, putative, expressed K09834: VTE1, tocopherol cyclase
3 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
4 Sobic.007G046950 - -
5 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
6 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
7 Sobic.005G062700 nifU, putative, expressed -
8 Sobic.002G030900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.001G104700 expressed protein -
10 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
11 Sobic.001G104600 expressed protein -
12 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
14 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
15 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
16 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
17 Sobic.007G124500 methyltransferase, putative, expressed -
18 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
19 Sobic.002G230600 glucose-6-phosphate isomerase, putative, expressed K01810: GPI, glucose-6-phosphate isomerase
20 Sobic.002G116000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Granule -bound starch synthase 1b (Os)(PubMedID : 27208977)@"GbssIIa(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659853)@starch synthase, putative, expressed K13679: granule-bound starch synthase


Gene co-expression network
sample Sobic004G113100 Sobic004G113100 Sobic003G103300 Sobic003G103300 Sobic004G113100--Sobic003G103300 Sobic004G125800 Sobic004G125800 Sobic004G113100--Sobic004G125800 Sobic001G015200 Sobic001G015200 Sobic004G113100--Sobic001G015200 Sobic007G046950 Sobic007G046950 Sobic004G113100--Sobic007G046950 Sobic010G101000 Sobic010G101000 Sobic004G113100--Sobic010G101000 Sobic009G225600 Sobic009G225600 Sobic004G113100--Sobic009G225600 Sobic005G062700 Sobic005G062700 Sobic004G113100--Sobic005G062700 Sobic002G030900 Sobic002G030900 Sobic004G113100--Sobic002G030900 Sobic001G104700 Sobic001G104700 Sobic004G113100--Sobic001G104700 Sobic003G103300--Sobic001G015200 Sobic008G088821 Sobic008G088821 Sobic003G103300--Sobic008G088821 Sobic004G268400 Sobic004G268400 Sobic003G103300--Sobic004G268400 Sobic003G103300--Sobic010G101000 Sobic001G018000 Sobic001G018000 Sobic003G103300--Sobic001G018000 Sobic001G411100 Sobic001G411100 Sobic003G103300--Sobic001G411100 Sobic003G103300--Sobic001G104700 Sobic002G060800 Sobic002G060800 Sobic003G103300--Sobic002G060800 Sobic002G351200 Sobic002G351200 Sobic003G103300--Sobic002G351200 Sobic004G125800--Sobic001G018000 Sobic004G125800--Sobic001G104700 Sobic004G125800--Sobic002G030900 Sobic004G125800--Sobic010G101000 Sobic004G125800--Sobic009G225600 Sobic007G124500 Sobic007G124500 Sobic004G125800--Sobic007G124500 Sobic004G125800--Sobic001G411100 Sobic004G125800--Sobic002G351200 Sobic001G046000 Sobic001G046000 Sobic004G125800--Sobic001G046000 Sobic001G015200--Sobic008G088821 Sobic007G166300 Sobic007G166300 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic001G104600 Sobic001G104600 Sobic007G046950--Sobic001G104600 Sobic007G046950--Sobic001G015200 Sobic007G046950--Sobic010G101000 Sobic007G046950--Sobic002G030900 Sobic007G046950--Sobic002G060800 Sobic007G046950--Sobic001G104700 Sobic007G046950--Sobic002G047400 Sobic007G046950--Sobic003G103300 Sobic007G046950--Sobic004G125800 Sobic004G267700 Sobic004G267700 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic010G101000--Sobic002G030900 Sobic003G186800 Sobic003G186800 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic010G101000--Sobic001G018000 Sobic010G104700 Sobic010G104700 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic010G101000--Sobic003G304300 Sobic009G225600--Sobic001G046000 Sobic009G225600--Sobic010G101000 Sobic009G225600--Sobic003G186800 Sobic009G225600--Sobic002G047400 Sobic001G485100 Sobic001G485100 Sobic009G225600--Sobic001G485100 Sobic009G225600--Sobic010G104700 Sobic009G225600--Sobic002G351200 Sobic009G225600--Sobic001G015200 Sobic003G380200 Sobic003G380200 Sobic009G225600--Sobic003G380200 Sobic005G062700--Sobic009G225600 Sobic005G062700--Sobic001G015200 Sobic005G062700--Sobic002G047400 Sobic001G303200 Sobic001G303200 Sobic005G062700--Sobic001G303200 Sobic006G221000 Sobic006G221000 Sobic005G062700--Sobic006G221000 Sobic005G062700--Sobic001G509200 Sobic005G172400 Sobic005G172400 Sobic005G062700--Sobic005G172400 Sobic007G108900 Sobic007G108900 Sobic005G062700--Sobic007G108900 Sobic004G305900 Sobic004G305900 Sobic005G062700--Sobic004G305900 Sobic002G030900--Sobic010G101000 Sobic002G030900--Sobic001G411100 Sobic002G030900--Sobic001G018000 Sobic002G030900--Sobic004G268400 Sobic002G030900--Sobic001G104700 Sobic002G030900--Sobic004G267700 Sobic002G030900--Sobic003G186800 Sobic002G030900--Sobic007G124500 Sobic002G030900--Sobic008G088821 Sobic001G104700--Sobic001G411100 Sobic001G104700--Sobic002G030900 Sobic001G104700--Sobic001G104600 Sobic001G104700--Sobic003G103300 Sobic001G104700--Sobic001G018000 Sobic001G104700--Sobic010G101000 Sobic001G104700--Sobic004G125800 Sobic001G104700--Sobic004G268400 Sobic001G104700--Sobic004G267700
Octagon: transcription factors


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