Gene annotation
Transcriptome id Sobic.004G303100.1
Synonym SHOC1
Functional annotation expressed protein
UniProt A0A194YSB2
Pfam -
Panther DB PTHR35764 PTHR35764:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52290 : shortage in chiasmata 1
RAP-DB (Rice) LOC_Os02g42910.1 : expressed protein
MaizeGDB (Corn) Zm00025a020979
Brachypodium KQK00517 , PNT69128 , PNT69129
Barley HORVU6Hr1G060710.8 , HORVU6Hr1G060710.9 , HORVU6Hr1G060710.2 , HORVU6Hr1G060710.3 , HORVU6Hr1G060710.1 , HORVU6Hr1G060710.6 , HORVU6Hr1G060710.7 , HORVU6Hr1G060710.4 , HORVU6Hr1G060710.5 , HORVU6Hr1G060710.18 , HORVU6Hr1G060710.19 , HORVU6Hr1G060710.10 , HORVU6Hr1G060710.11 , HORVU6Hr1G060710.12 , HORVU6Hr1G060710.13 , HORVU6Hr1G060710.15 , HORVU6Hr1G060710.16 , HORVU6Hr1G060710.17 , HORVU4Hr1G019470.1 , HORVU4Hr1G019470.10 , HORVU4Hr1G019470.2 , HORVU4Hr1G019470.9 , HORVU4Hr1G019470.8 , HORVU4Hr1G019470.5 , HORVU4Hr1G019470.4 , HORVU4Hr1G019470.7 , HORVU4Hr1G019470.6 , HORVU6Hr1G060710.21 , HORVU6Hr1G060710.20 , HORVU4Hr1G019470.3 , HORVU6Hr1G060710.22 , HORVU6Hr1G060710.14
Wheat TraesCS6D02G220100 , TraesCS6B02G265900 , TraesCS6A02G237400 , TraesCS4B02G109500 , TraesCS4D02G106800 , TraesCS4A02G205900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G048200 pentatricopeptide, putative, expressed -
2 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.003G077700 DUF647 domain containing protein, putative, expressed -
4 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
5 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
6 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
7 Sobic.006G112600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
8 Sobic.004G165000 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
9 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
10 Sobic.009G192800 tRNA methyltran, putative, expressed -
11 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
12 Sobic.001G025800 pentatricopeptide, putative, expressed -
13 Sobic.004G206100 transmembrane protein 17, putative, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
14 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
15 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
16 Sobic.010G125866 - -
17 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
18 Sobic.003G125900 DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed K02470: DNA gyrase subunit B
19 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
20 Sobic.001G011400 CRAL/TRIO domain containing protein, expressed -


Gene co-expression network
sample Sobic004G303100 Sobic004G303100 Sobic002G048200 Sobic002G048200 Sobic004G303100--Sobic002G048200 Sobic002G028400 Sobic002G028400 Sobic004G303100--Sobic002G028400 Sobic003G077700 Sobic003G077700 Sobic004G303100--Sobic003G077700 Sobic003G094350 Sobic003G094350 Sobic004G303100--Sobic003G094350 Sobic002G347600 Sobic002G347600 Sobic004G303100--Sobic002G347600 Sobic008G050400 Sobic008G050400 Sobic004G303100--Sobic008G050400 Sobic006G112600 Sobic006G112600 Sobic004G303100--Sobic006G112600 Sobic004G165000 Sobic004G165000 Sobic004G303100--Sobic004G165000 Sobic002G133900 Sobic002G133900 Sobic004G303100--Sobic002G133900 Sobic001G495200 Sobic001G495200 Sobic002G048200--Sobic001G495200 Sobic005G143500 Sobic005G143500 Sobic002G048200--Sobic005G143500 Sobic001G126300 Sobic001G126300 Sobic002G048200--Sobic001G126300 Sobic001G025800 Sobic001G025800 Sobic002G048200--Sobic001G025800 Sobic002G181000 Sobic002G181000 Sobic002G048200--Sobic002G181000 Sobic002G048200--Sobic004G165000 Sobic004G065300 Sobic004G065300 Sobic002G048200--Sobic004G065300 Sobic003G232700 Sobic003G232700 Sobic002G048200--Sobic003G232700 Sobic003G151500 Sobic003G151500 Sobic002G048200--Sobic003G151500 Sobic002G028400--Sobic002G133900 Sobic002G028400--Sobic003G094350 Sobic001G500600 Sobic001G500600 Sobic002G028400--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic002G028400--Sobic003G070900 Sobic009G170200 Sobic009G170200 Sobic002G028400--Sobic009G170200 Sobic008G074000 Sobic008G074000 Sobic002G028400--Sobic008G074000 Sobic001G540600 Sobic001G540600 Sobic002G028400--Sobic001G540600 Sobic003G287900 Sobic003G287900 Sobic002G028400--Sobic003G287900 Sobic007G103400 Sobic007G103400 Sobic002G028400--Sobic007G103400 Sobic004G337400 Sobic004G337400 Sobic003G077700--Sobic004G337400 Sobic001G516901 Sobic001G516901 Sobic003G077700--Sobic001G516901 Sobic005G231100 Sobic005G231100 Sobic003G077700--Sobic005G231100 Sobic005G084500 Sobic005G084500 Sobic003G077700--Sobic005G084500 Sobic001G378100 Sobic001G378100 Sobic003G077700--Sobic001G378100 Sobic003G233700 Sobic003G233700 Sobic003G077700--Sobic003G233700 Sobic003G077700--Sobic001G500600 Sobic003G077700--Sobic002G347600 Sobic003G301300 Sobic003G301300 Sobic003G077700--Sobic003G301300 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic003G094350--Sobic002G028400 Sobic004G336200 Sobic004G336200 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic006G038500 Sobic006G038500 Sobic002G347600--Sobic006G038500 Sobic002G347600--Sobic003G301300 Sobic002G347600--Sobic004G336200 Sobic008G091400 Sobic008G091400 Sobic002G347600--Sobic008G091400 Sobic006G128300 Sobic006G128300 Sobic002G347600--Sobic006G128300 Sobic003G247400 Sobic003G247400 Sobic002G347600--Sobic003G247400 Sobic003G141100 Sobic003G141100 Sobic002G347600--Sobic003G141100 Sobic004G328400 Sobic004G328400 Sobic002G347600--Sobic004G328400 Sobic009G121000 Sobic009G121000 Sobic002G347600--Sobic009G121000 Sobic002G272100 Sobic002G272100 Sobic008G050400--Sobic002G272100 Sobic002G351600 Sobic002G351600 Sobic008G050400--Sobic002G351600 Sobic008G050400--Sobic005G143500 Sobic002G274200 Sobic002G274200 Sobic008G050400--Sobic002G274200 Sobic002G401800 Sobic002G401800 Sobic008G050400--Sobic002G401800 Sobic001G083100 Sobic001G083100 Sobic008G050400--Sobic001G083100 Sobic008G050400--Sobic001G495200 Sobic008G050400--Sobic003G232700 Sobic002G406700 Sobic002G406700 Sobic008G050400--Sobic002G406700 Sobic006G112600--Sobic005G143500 Sobic006G112600--Sobic001G495200 Sobic006G112600--Sobic008G050400 Sobic006G112600--Sobic002G274200 Sobic006G112600--Sobic003G232700 Sobic008G039600 Sobic008G039600 Sobic006G112600--Sobic008G039600 Sobic001G054100 Sobic001G054100 Sobic006G112600--Sobic001G054100 Sobic006G112600--Sobic002G181000 Sobic006G112600--Sobic002G347600 Sobic009G175500 Sobic009G175500 Sobic004G165000--Sobic009G175500 Sobic004G165000--Sobic001G500600 Sobic001G283700 Sobic001G283700 Sobic004G165000--Sobic001G283700 Sobic004G165000--Sobic003G094350 Sobic004G165000--Sobic002G181000 Sobic006G132000 Sobic006G132000 Sobic004G165000--Sobic006G132000 Sobic004G165000--Sobic001G126300 Sobic006G106400 Sobic006G106400 Sobic004G165000--Sobic006G106400 Sobic004G165000--Sobic002G401800 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic002G133900--Sobic003G287900 Sobic002G405100 Sobic002G405100 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic002G133900--Sobic005G100300 Sobic002G133900--Sobic002G028400 Sobic002G133900--Sobic007G103400 Sobic002G133900--Sobic009G170200
Octagon: transcription factors


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