Gene annotation
Transcriptome id Sobic.009G192800.1
Synonym Sb09g025160
Functional annotation tRNA methyltran, putative, expressed
UniProt C5Z0U3
Pfam PF13659
Panther DB PTHR35276 PTHR35276:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16445 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os05g43582.1 : tRNA methyltran, putative, expressed
MaizeGDB (Corn) Zm00025a043752 , Zm00025a044197
Brachypodium KQK05476
Barley HORVU1Hr1G078110.8 , HORVU1Hr1G078110.9 , HORVU1Hr1G078110.2 , HORVU1Hr1G078110.3 , HORVU1Hr1G078110.6 , HORVU1Hr1G078110.7 , HORVU1Hr1G078110.4 , HORVU1Hr1G078110.5 , HORVU1Hr1G078110.13 , HORVU1Hr1G078110.11 , HORVU1Hr1G078110.10 , HORVU1Hr1G078110.12 , HORVU1Hr1G078110.16 , HORVU1Hr1G078110.17
Wheat TraesCS1A02G326200 , TraesCS1B02G339900 , TraesCS1B02G339900 , TraesCS1D02G328300 , TraesCS1B02G339600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
2 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
3 Sobic.003G180200 - -
4 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
5 Sobic.003G217700 - -
6 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
7 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
8 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
9 Sobic.003G085100 MYB family transcription factor, putative, expressed -
10 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
11 Sobic.001G540600 expressed protein -
12 Sobic.001G011400 CRAL/TRIO domain containing protein, expressed -
13 Sobic.003G077700 DUF647 domain containing protein, putative, expressed -
14 Sobic.001G244700 RIO1 family protein, expressed K08851: TP53RK, PRPK, TP53 regulating kinase and related kinases
15 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
16 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
17 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
18 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
19 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
20 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL


Gene co-expression network
sample Sobic009G192800 Sobic009G192800 Sobic004G337400 Sobic004G337400 Sobic009G192800--Sobic004G337400 Sobic007G005400 Sobic007G005400 Sobic009G192800--Sobic007G005400 Sobic003G180200 Sobic003G180200 Sobic009G192800--Sobic003G180200 Sobic005G084500 Sobic005G084500 Sobic009G192800--Sobic005G084500 Sobic003G217700 Sobic003G217700 Sobic009G192800--Sobic003G217700 Sobic001G217900 Sobic001G217900 Sobic009G192800--Sobic001G217900 Sobic006G128300 Sobic006G128300 Sobic009G192800--Sobic006G128300 Sobic002G028400 Sobic002G028400 Sobic009G192800--Sobic002G028400 Sobic003G085100 Sobic003G085100 Sobic009G192800--Sobic003G085100 Sobic007G136200 Sobic007G136200 Sobic004G337400--Sobic007G136200 Sobic001G378100 Sobic001G378100 Sobic004G337400--Sobic001G378100 Sobic006G232600 Sobic006G232600 Sobic004G337400--Sobic006G232600 Sobic004G019800 Sobic004G019800 Sobic004G337400--Sobic004G019800 Sobic003G077700 Sobic003G077700 Sobic004G337400--Sobic003G077700 Sobic010G002700 Sobic010G002700 Sobic004G337400--Sobic010G002700 Sobic005G106600 Sobic005G106600 Sobic004G337400--Sobic005G106600 Sobic004G337400--Sobic005G084500 Sobic010G043800 Sobic010G043800 Sobic004G337400--Sobic010G043800 Sobic007G005400--Sobic003G085100 Sobic002G118200 Sobic002G118200 Sobic007G005400--Sobic002G118200 Sobic007G005400--Sobic005G084500 Sobic004G238200 Sobic004G238200 Sobic007G005400--Sobic004G238200 Sobic003G150800 Sobic003G150800 Sobic007G005400--Sobic003G150800 Sobic003G287900 Sobic003G287900 Sobic007G005400--Sobic003G287900 Sobic005G231100 Sobic005G231100 Sobic007G005400--Sobic005G231100 Sobic007G005400--Sobic004G337400 Sobic007G185700 Sobic007G185700 Sobic007G005400--Sobic007G185700 Sobic003G180200--Sobic009G192800 Sobic001G244700 Sobic001G244700 Sobic003G180200--Sobic001G244700 Sobic001G105200 Sobic001G105200 Sobic003G180200--Sobic001G105200 Sobic001G251800 Sobic001G251800 Sobic003G180200--Sobic001G251800 Sobic001G100900 Sobic001G100900 Sobic003G180200--Sobic001G100900 Sobic002G073250 Sobic002G073250 Sobic003G180200--Sobic002G073250 Sobic002G211800 Sobic002G211800 Sobic003G180200--Sobic002G211800 Sobic003G180200--Sobic003G217700 Sobic001G420400 Sobic001G420400 Sobic003G180200--Sobic001G420400 Sobic005G084500--Sobic007G005400 Sobic005G084500--Sobic002G118200 Sobic005G084500--Sobic004G238200 Sobic005G084500--Sobic004G337400 Sobic006G219600 Sobic006G219600 Sobic005G084500--Sobic006G219600 Sobic005G084500--Sobic004G019800 Sobic004G163800 Sobic004G163800 Sobic005G084500--Sobic004G163800 Sobic001G530900 Sobic001G530900 Sobic005G084500--Sobic001G530900 Sobic001G516901 Sobic001G516901 Sobic005G084500--Sobic001G516901 Sobic003G217700--Sobic007G185700 Sobic010G176550 Sobic010G176550 Sobic003G217700--Sobic010G176550 Sobic007G023200 Sobic007G023200 Sobic003G217700--Sobic007G023200 Sobic003G217700--Sobic001G530900 Sobic003G217700--Sobic005G084500 Sobic004G042200 Sobic004G042200 Sobic003G217700--Sobic004G042200 Sobic008G001900 Sobic008G001900 Sobic003G217700--Sobic008G001900 Sobic001G198100 Sobic001G198100 Sobic003G217700--Sobic001G198100 Sobic003G217700--Sobic004G238200 Sobic007G058100 Sobic007G058100 Sobic001G217900--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic001G217900--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic001G217900--Sobic008G129900 Sobic001G217900--Sobic001G378100 Sobic001G258200 Sobic001G258200 Sobic001G217900--Sobic001G258200 Sobic002G206300 Sobic002G206300 Sobic001G217900--Sobic002G206300 Sobic001G263100 Sobic001G263100 Sobic001G217900--Sobic001G263100 Sobic008G033000 Sobic008G033000 Sobic001G217900--Sobic008G033000 Sobic001G540600 Sobic001G540600 Sobic001G217900--Sobic001G540600 Sobic002G218500 Sobic002G218500 Sobic006G128300--Sobic002G218500 Sobic004G079800 Sobic004G079800 Sobic006G128300--Sobic004G079800 Sobic006G038500 Sobic006G038500 Sobic006G128300--Sobic006G038500 Sobic002G431300 Sobic002G431300 Sobic006G128300--Sobic002G431300 Sobic002G347600 Sobic002G347600 Sobic006G128300--Sobic002G347600 Sobic002G042500 Sobic002G042500 Sobic006G128300--Sobic002G042500 Sobic006G128300--Sobic008G001900 Sobic001G126300 Sobic001G126300 Sobic006G128300--Sobic001G126300 Sobic006G031800 Sobic006G031800 Sobic006G128300--Sobic006G031800 Sobic002G133900 Sobic002G133900 Sobic002G028400--Sobic002G133900 Sobic003G094350 Sobic003G094350 Sobic002G028400--Sobic003G094350 Sobic001G500600 Sobic001G500600 Sobic002G028400--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic002G028400--Sobic003G070900 Sobic009G170200 Sobic009G170200 Sobic002G028400--Sobic009G170200 Sobic008G074000 Sobic008G074000 Sobic002G028400--Sobic008G074000 Sobic002G028400--Sobic001G540600 Sobic002G028400--Sobic003G287900 Sobic007G103400 Sobic007G103400 Sobic002G028400--Sobic007G103400 Sobic003G085100--Sobic003G150800 Sobic003G085100--Sobic007G005400 Sobic005G111550 Sobic005G111550 Sobic003G085100--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic003G085100--Sobic003G160800 Sobic005G063000 Sobic005G063000 Sobic003G085100--Sobic005G063000 Sobic003G233700 Sobic003G233700 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G085100--Sobic003G287900 Sobic003G085100--Sobic008G001900
Octagon: transcription factors


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