Gene annotation
Transcriptome id Sobic.006G112600.4,Sobic.006G112600.5,Sobic.006G112600.1,Sobic.006G112600.3,Sobic.006G112600.2
Synonym Sb06g019430
Functional annotation indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
UniProt A0A1Z5RDD8 , A0A1Z5RDG3 , A0A1B6PLH4 , A0A1Z5RDT3 , C5YA91
Pfam PF00218
Panther DB PTHR22854 PTHR22854:SF10
NCBI CDD KOG4201; Anthranilate synthase component II
KEGG Orthology K01609; indole-3-glycerol phosphate synthase
Gene Ontology GO:0004425; indole-3-glycerol-phosphate synthase activity


Orthologs (automatic annotation)
TAIR AT5G48220 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os04g39270.1 : indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a056259
Brachypodium KQJ83065
Barley HORVU2Hr1G081460.9 , HORVU2Hr1G081460.8 , HORVU2Hr1G081460.5 , HORVU2Hr1G081460.4 , HORVU2Hr1G081460.7 , HORVU2Hr1G081460.6 , HORVU2Hr1G081460.1 , HORVU2Hr1G081460.3 , HORVU2Hr1G081460.2 , HORVU7Hr1G114660.14 , HORVU7Hr1G114660.13 , HORVU7Hr1G114660.11 , HORVU7Hr1G114660.8 , HORVU7Hr1G114660.7 , HORVU7Hr1G114660.4 , HORVU7Hr1G114660.3 , HORVU7Hr1G114660.2 , HORVU2Hr1G081460.11 , HORVU2Hr1G081460.10 , HORVU7Hr1G114660.1
Wheat TraesCS7D02G501700 , TraesCS7B02G423900 , TraesCS2A02G335200 , TraesCS7A02G512300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
2 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
3 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
4 Sobic.002G274200 expressed protein -
5 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
6 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
7 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
8 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
9 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
10 Sobic.002G048200 pentatricopeptide, putative, expressed -
11 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
12 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
13 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
14 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
15 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
16 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
17 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
18 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
19 Sobic.004G079800 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
20 Sobic.002G272100 expressed protein -


Gene co-expression network
sample Sobic006G112600 Sobic006G112600 Sobic005G143500 Sobic005G143500 Sobic006G112600--Sobic005G143500 Sobic001G495200 Sobic001G495200 Sobic006G112600--Sobic001G495200 Sobic008G050400 Sobic008G050400 Sobic006G112600--Sobic008G050400 Sobic002G274200 Sobic002G274200 Sobic006G112600--Sobic002G274200 Sobic003G232700 Sobic003G232700 Sobic006G112600--Sobic003G232700 Sobic008G039600 Sobic008G039600 Sobic006G112600--Sobic008G039600 Sobic001G054100 Sobic001G054100 Sobic006G112600--Sobic001G054100 Sobic002G181000 Sobic002G181000 Sobic006G112600--Sobic002G181000 Sobic002G347600 Sobic002G347600 Sobic006G112600--Sobic002G347600 Sobic005G110400 Sobic005G110400 Sobic005G143500--Sobic005G110400 Sobic005G143500--Sobic008G039600 Sobic001G368500 Sobic001G368500 Sobic005G143500--Sobic001G368500 Sobic002G401800 Sobic002G401800 Sobic005G143500--Sobic002G401800 Sobic006G106400 Sobic006G106400 Sobic005G143500--Sobic006G106400 Sobic002G272100 Sobic002G272100 Sobic005G143500--Sobic002G272100 Sobic008G073100 Sobic008G073100 Sobic005G143500--Sobic008G073100 Sobic005G143500--Sobic001G495200 Sobic003G324700 Sobic003G324700 Sobic005G143500--Sobic003G324700 Sobic001G126300 Sobic001G126300 Sobic001G495200--Sobic001G126300 Sobic001G495200--Sobic003G232700 Sobic004G336000 Sobic004G336000 Sobic001G495200--Sobic004G336000 Sobic004G011300 Sobic004G011300 Sobic001G495200--Sobic004G011300 Sobic001G495200--Sobic005G143500 Sobic001G495200--Sobic006G106400 Sobic001G495200--Sobic002G181000 Sobic001G495200--Sobic005G110400 Sobic002G043600 Sobic002G043600 Sobic001G495200--Sobic002G043600 Sobic008G050400--Sobic002G272100 Sobic002G351600 Sobic002G351600 Sobic008G050400--Sobic002G351600 Sobic008G050400--Sobic005G143500 Sobic008G050400--Sobic002G274200 Sobic008G050400--Sobic002G401800 Sobic001G083100 Sobic001G083100 Sobic008G050400--Sobic001G083100 Sobic008G050400--Sobic001G495200 Sobic008G050400--Sobic003G232700 Sobic002G406700 Sobic002G406700 Sobic008G050400--Sobic002G406700 Sobic002G274200--Sobic005G110400 Sobic002G274200--Sobic002G272100 Sobic006G021600 Sobic006G021600 Sobic002G274200--Sobic006G021600 Sobic002G274200--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G274200--Sobic002G405100 Sobic003G077400 Sobic003G077400 Sobic002G274200--Sobic003G077400 Sobic002G274200--Sobic001G368500 Sobic002G274200--Sobic005G143500 Sobic002G274200--Sobic002G401800 Sobic001G500600 Sobic001G500600 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic003G232700--Sobic001G495200 Sobic003G141100 Sobic003G141100 Sobic003G232700--Sobic003G141100 Sobic003G352500 Sobic003G352500 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G301300 Sobic003G301300 Sobic003G232700--Sobic003G301300 Sobic008G039600--Sobic005G143500 Sobic008G039600--Sobic001G083100 Sobic008G039600--Sobic006G106400 Sobic008G039600--Sobic002G401800 Sobic008G039600--Sobic002G272100 Sobic010G002000 Sobic010G002000 Sobic008G039600--Sobic010G002000 Sobic008G039600--Sobic001G368500 Sobic003G094350 Sobic003G094350 Sobic008G039600--Sobic003G094350 Sobic008G039600--Sobic002G181000 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic003G372900 Sobic003G372900 Sobic001G054100--Sobic003G372900 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic006G038500 Sobic006G038500 Sobic002G347600--Sobic006G038500 Sobic002G347600--Sobic003G301300 Sobic004G336200 Sobic004G336200 Sobic002G347600--Sobic004G336200 Sobic008G091400 Sobic008G091400 Sobic002G347600--Sobic008G091400 Sobic006G128300 Sobic006G128300 Sobic002G347600--Sobic006G128300 Sobic003G247400 Sobic003G247400 Sobic002G347600--Sobic003G247400 Sobic002G347600--Sobic003G141100 Sobic002G347600--Sobic004G328400 Sobic009G121000 Sobic009G121000 Sobic002G347600--Sobic009G121000
Octagon: transcription factors


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