Gene annotation
Transcriptome id Sobic.002G048200.1
Synonym EMB175, emb1899, Sb02g004050, EMB166
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0W2A1
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF448
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G03800 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g07620.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a016095
Brachypodium KQK20685 , KQK20684
Barley HORVU2Hr1G053030.11 , HORVU2Hr1G053030.10 , HORVU2Hr1G053030.12 , HORVU2Hr1G053030.1 , HORVU2Hr1G053030.3 , HORVU2Hr1G053030.2 , HORVU2Hr1G053030.5 , HORVU2Hr1G053030.4 , HORVU2Hr1G053030.7 , HORVU2Hr1G053030.6 , HORVU2Hr1G053030.9 , HORVU2Hr1G053030.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
2 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
3 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
4 Sobic.001G025800 pentatricopeptide, putative, expressed -
5 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.004G165000 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
7 Sobic.004G065300 CR084 protein, putative, expressed -
8 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
9 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
10 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
11 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
12 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
13 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
14 Sobic.006G112600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
15 Sobic.001G513800 ankyrin repeat domain containing protein, expressed -
16 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
17 Sobic.001G114700 - -
18 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
19 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
20 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -


Gene co-expression network
sample Sobic002G048200 Sobic002G048200 Sobic001G495200 Sobic001G495200 Sobic002G048200--Sobic001G495200 Sobic005G143500 Sobic005G143500 Sobic002G048200--Sobic005G143500 Sobic001G126300 Sobic001G126300 Sobic002G048200--Sobic001G126300 Sobic001G025800 Sobic001G025800 Sobic002G048200--Sobic001G025800 Sobic002G181000 Sobic002G181000 Sobic002G048200--Sobic002G181000 Sobic004G165000 Sobic004G165000 Sobic002G048200--Sobic004G165000 Sobic004G065300 Sobic004G065300 Sobic002G048200--Sobic004G065300 Sobic003G232700 Sobic003G232700 Sobic002G048200--Sobic003G232700 Sobic003G151500 Sobic003G151500 Sobic002G048200--Sobic003G151500 Sobic001G495200--Sobic001G126300 Sobic001G495200--Sobic003G232700 Sobic004G336000 Sobic004G336000 Sobic001G495200--Sobic004G336000 Sobic004G011300 Sobic004G011300 Sobic001G495200--Sobic004G011300 Sobic001G495200--Sobic005G143500 Sobic006G106400 Sobic006G106400 Sobic001G495200--Sobic006G106400 Sobic001G495200--Sobic002G181000 Sobic005G110400 Sobic005G110400 Sobic001G495200--Sobic005G110400 Sobic002G043600 Sobic002G043600 Sobic001G495200--Sobic002G043600 Sobic005G143500--Sobic005G110400 Sobic008G039600 Sobic008G039600 Sobic005G143500--Sobic008G039600 Sobic001G368500 Sobic001G368500 Sobic005G143500--Sobic001G368500 Sobic002G401800 Sobic002G401800 Sobic005G143500--Sobic002G401800 Sobic005G143500--Sobic006G106400 Sobic002G272100 Sobic002G272100 Sobic005G143500--Sobic002G272100 Sobic008G073100 Sobic008G073100 Sobic005G143500--Sobic008G073100 Sobic005G143500--Sobic001G495200 Sobic003G324700 Sobic003G324700 Sobic005G143500--Sobic003G324700 Sobic001G126300--Sobic005G110400 Sobic001G126300--Sobic008G073100 Sobic001G126300--Sobic001G495200 Sobic003G160800 Sobic003G160800 Sobic001G126300--Sobic003G160800 Sobic009G148500 Sobic009G148500 Sobic001G126300--Sobic009G148500 Sobic003G387100 Sobic003G387100 Sobic001G126300--Sobic003G387100 Sobic009G175500 Sobic009G175500 Sobic001G126300--Sobic009G175500 Sobic004G336200 Sobic004G336200 Sobic001G126300--Sobic004G336200 Sobic003G301300 Sobic003G301300 Sobic001G126300--Sobic003G301300 Sobic004G003900 Sobic004G003900 Sobic001G025800--Sobic004G003900 Sobic005G117300 Sobic005G117300 Sobic001G025800--Sobic005G117300 Sobic001G025800--Sobic001G495200 Sobic001G025800--Sobic002G048200 Sobic009G251000 Sobic009G251000 Sobic001G025800--Sobic009G251000 Sobic001G513800 Sobic001G513800 Sobic001G025800--Sobic001G513800 Sobic003G267500 Sobic003G267500 Sobic001G025800--Sobic003G267500 Sobic007G015300 Sobic007G015300 Sobic001G025800--Sobic007G015300 Sobic009G092900 Sobic009G092900 Sobic001G025800--Sobic009G092900 Sobic002G181000--Sobic003G232700 Sobic001G500600 Sobic001G500600 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic002G181000--Sobic009G148500 Sobic004G165000--Sobic009G175500 Sobic004G165000--Sobic001G500600 Sobic001G283700 Sobic001G283700 Sobic004G165000--Sobic001G283700 Sobic003G094350 Sobic003G094350 Sobic004G165000--Sobic003G094350 Sobic004G165000--Sobic002G181000 Sobic006G132000 Sobic006G132000 Sobic004G165000--Sobic006G132000 Sobic004G165000--Sobic001G126300 Sobic004G165000--Sobic006G106400 Sobic004G165000--Sobic002G401800 Sobic004G065300--Sobic001G368500 Sobic006G055800 Sobic006G055800 Sobic004G065300--Sobic006G055800 Sobic003G432500 Sobic003G432500 Sobic004G065300--Sobic003G432500 Sobic004G065300--Sobic005G110400 Sobic004G065300--Sobic003G324700 Sobic006G256600 Sobic006G256600 Sobic004G065300--Sobic006G256600 Sobic005G002900 Sobic005G002900 Sobic004G065300--Sobic005G002900 Sobic001G469933 Sobic001G469933 Sobic004G065300--Sobic001G469933 Sobic002G297400 Sobic002G297400 Sobic004G065300--Sobic002G297400 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic003G232700--Sobic001G495200 Sobic003G141100 Sobic003G141100 Sobic003G232700--Sobic003G141100 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G232700--Sobic003G301300 Sobic003G151500--Sobic009G148500 Sobic002G406700 Sobic002G406700 Sobic003G151500--Sobic002G406700 Sobic003G151500--Sobic003G432500 Sobic003G151500--Sobic004G336200 Sobic003G151500--Sobic001G126300 Sobic003G151500--Sobic005G110400 Sobic001G083100 Sobic001G083100 Sobic003G151500--Sobic001G083100 Sobic003G372900 Sobic003G372900 Sobic003G151500--Sobic003G372900 Sobic003G151500--Sobic008G073100
Octagon: transcription factors


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