Gene annotation
Transcriptome id Sobic.002G343300.1
Synonym Sb02g036710
Functional annotation zinc finger family protein, putative, expressed
UniProt C5XBP2
Pfam PF13637 PF00642
Panther DB PTHR14493:SF52 PTHR14493
NCBI CDD KOG1595; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41900 : CCCH-type zinc finger protein with ARM repeat domain
RAP-DB (Rice) LOC_Os07g38090.2 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a014939 , Zm00025a048432
Brachypodium PNT74906
Barley HORVU2Hr1G058850.1 , HORVU2Hr1G058850.4 , HORVU2Hr1G058850.2
Wheat -
Populus -


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cDNA sequences
Sobic.002G343300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G255700 sucrase-related, putative, expressed -
2 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
3 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
4 Sobic.004G059900 bZIP transcription factor domain containing protein, expressed -
5 Sobic.009G066900 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
6 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
7 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
8 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
9 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
10 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
11 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
12 Sobic.001G103200 DNA binding protein, putative, expressed -
13 Sobic.008G152600 LIM domain-containing protein, putative, expressed -
14 Sobic.002G036400 OsFBK18 - F-box domain and kelch repeat containing protein, expressed -
15 Sobic.001G082000 zinc finger family protein, putative, expressed K06874: zinc finger protein
16 Sobic.002G431600 protein kinase APK1B, chloroplast precursor, putative, expressed -
17 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
18 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
19 Sobic.009G180500 Myb-like DNA-binding domain containing protein, putative, expressed -
20 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -


Gene co-expression network
sample Sobic002G343300 Sobic002G343300 Sobic004G255700 Sobic004G255700 Sobic002G343300--Sobic004G255700 Sobic008G047400 Sobic008G047400 Sobic002G343300--Sobic008G047400 Sobic006G033200 Sobic006G033200 Sobic002G343300--Sobic006G033200 Sobic004G059900 Sobic004G059900 Sobic002G343300--Sobic004G059900 Sobic009G066900 Sobic009G066900 Sobic002G343300--Sobic009G066900 Sobic002G134600 Sobic002G134600 Sobic002G343300--Sobic002G134600 Sobic008G124900 Sobic008G124900 Sobic002G343300--Sobic008G124900 Sobic009G219900 Sobic009G219900 Sobic002G343300--Sobic009G219900 Sobic001G541100 Sobic001G541100 Sobic002G343300--Sobic001G541100 Sobic004G255700--Sobic008G047400 Sobic004G255700--Sobic002G343300 Sobic001G193300 Sobic001G193300 Sobic004G255700--Sobic001G193300 Sobic009G135900 Sobic009G135900 Sobic004G255700--Sobic009G135900 Sobic001G446200 Sobic001G446200 Sobic004G255700--Sobic001G446200 Sobic004G255700--Sobic006G033200 Sobic004G202500 Sobic004G202500 Sobic004G255700--Sobic004G202500 Sobic006G034500 Sobic006G034500 Sobic004G255700--Sobic006G034500 Sobic004G255700--Sobic009G219900 Sobic008G047400--Sobic008G124900 Sobic010G278200 Sobic010G278200 Sobic008G047400--Sobic010G278200 Sobic008G047400--Sobic006G033200 Sobic008G047400--Sobic004G202500 Sobic003G302900 Sobic003G302900 Sobic008G047400--Sobic003G302900 Sobic010G074300 Sobic010G074300 Sobic008G047400--Sobic010G074300 Sobic008G047400--Sobic004G255700 Sobic010G147100 Sobic010G147100 Sobic008G047400--Sobic010G147100 Sobic003G309200 Sobic003G309200 Sobic008G047400--Sobic003G309200 Sobic010G130000 Sobic010G130000 Sobic006G033200--Sobic010G130000 Sobic006G033200--Sobic008G124900 Sobic006G033200--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic006G033200--Sobic009G138100 Sobic007G093800 Sobic007G093800 Sobic006G033200--Sobic007G093800 Sobic006G033200--Sobic004G202500 Sobic007G179800 Sobic007G179800 Sobic006G033200--Sobic007G179800 Sobic006G033200--Sobic003G302900 Sobic003G312200 Sobic003G312200 Sobic006G033200--Sobic003G312200 Sobic001G358300 Sobic001G358300 Sobic004G059900--Sobic001G358300 Sobic003G238000 Sobic003G238000 Sobic004G059900--Sobic003G238000 Sobic004G059900--Sobic002G343300 Sobic001G311100 Sobic001G311100 Sobic004G059900--Sobic001G311100 Sobic007G216500 Sobic007G216500 Sobic004G059900--Sobic007G216500 Sobic002G293300 Sobic002G293300 Sobic004G059900--Sobic002G293300 Sobic001G415000 Sobic001G415000 Sobic004G059900--Sobic001G415000 Sobic009G231200 Sobic009G231200 Sobic004G059900--Sobic009G231200 Sobic002G397600 Sobic002G397600 Sobic004G059900--Sobic002G397600 Sobic009G066900--Sobic003G309200 Sobic009G066900--Sobic008G124900 Sobic003G119700 Sobic003G119700 Sobic009G066900--Sobic003G119700 Sobic009G066900--Sobic002G134600 Sobic009G066900--Sobic006G033200 Sobic001G333600 Sobic001G333600 Sobic009G066900--Sobic001G333600 Sobic009G108700 Sobic009G108700 Sobic009G066900--Sobic009G108700 Sobic009G066900--Sobic008G047400 Sobic007G006900 Sobic007G006900 Sobic009G066900--Sobic007G006900 Sobic002G134600--Sobic003G309200 Sobic002G134600--Sobic007G006900 Sobic001G226700 Sobic001G226700 Sobic002G134600--Sobic001G226700 Sobic001G425800 Sobic001G425800 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic001G362200 Sobic001G362200 Sobic002G134600--Sobic001G362200 Sobic009G219000 Sobic009G219000 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic008G124900--Sobic007G093800 Sobic008G124900--Sobic003G119700 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic010G188100 Sobic010G188100 Sobic009G219900--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic009G219900--Sobic001G220400 Sobic003G077900 Sobic003G077900 Sobic009G219900--Sobic003G077900 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic010G101500 Sobic010G101500 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic002G431600 Sobic002G431600 Sobic009G219900--Sobic002G431600 Sobic001G541100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic001G541100--Sobic001G323000 Sobic001G541100--Sobic009G219900 Sobic001G541100--Sobic009G138100 Sobic006G209400 Sobic006G209400 Sobic001G541100--Sobic006G209400 Sobic001G395400 Sobic001G395400 Sobic001G541100--Sobic001G395400 Sobic001G541100--Sobic010G130000 Sobic001G105500 Sobic001G105500 Sobic001G541100--Sobic001G105500 Sobic001G541100--Sobic002G134600
Octagon: transcription factors


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