Gene annotation
Transcriptome id Sobic.010G071600.2,Sobic.010G071600.1
Synonym LRL3, Sb10g006250
Functional annotation PTF1, putative, expressed
UniProt A0A194YHU5 , C5Z5Y5
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58010 : LJRHL1-like 3
RAP-DB (Rice) LOC_Os06g09370.2 : PTF1, putative, expressed
MaizeGDB (Corn) Zm00025a042434 , Zm00025a049699
Brachypodium KQK19168 , KQK19169
Barley HORVU7Hr1G032420.6 , HORVU7Hr1G032420.7 , HORVU7Hr1G032420.4 , HORVU7Hr1G032420.5 , HORVU7Hr1G032420.2 , HORVU7Hr1G032420.3 , HORVU7Hr1G032420.1 , HORVU7Hr1G032420.8 , HORVU7Hr1G032420.9 , HORVU7Hr1G032420.21 , HORVU7Hr1G032420.20 , HORVU7Hr1G032420.23 , HORVU7Hr1G032420.22 , HORVU7Hr1G032420.25 , HORVU7Hr1G032420.24 , HORVU7Hr1G032420.27 , HORVU7Hr1G032420.26 , HORVU7Hr1G032420.29 , HORVU7Hr1G032420.28 , HORVU7Hr1G032420.18 , HORVU7Hr1G032420.14 , HORVU7Hr1G032420.15 , HORVU7Hr1G032420.16 , HORVU7Hr1G032420.17 , HORVU7Hr1G032420.10 , HORVU7Hr1G032420.11 , HORVU7Hr1G032420.12 , HORVU7Hr1G032420.13
Wheat TraesCS7A02G157700 , TraesCS7A02G157700 , TraesCS7A02G157700 , TraesCS7B02G062100 , TraesCS7B02G062100 , TraesCS7B02G062100 , TraesCS7D02G158300 , TraesCS7D02G158300
Populus -


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cDNA sequences
Sobic.010G071600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
3 Sobic.004G311400 PHD-finger domain containing protein, putative, expressed -
4 Sobic.004G154300 ThiF family domain containing protein, putative, expressed K12164: UBA5, ubiquitin-like modifier-activating enzyme 5
5 Sobic.009G060300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alliin lyase precursor, putative, expressed K16903: L-tryptophan---pyruvate aminotransferase
6 Sobic.009G159000 phosphatidic acid phosphatase-related, putative, expressed -
7 Sobic.003G358200 reticulon domain containing protein, putative, expressed -
8 Sobic.001G534600 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
9 Sobic.009G132650 - -
10 Sobic.006G245100 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
11 Sobic.010G089400 TLD family protein, putative, expressed -
12 Sobic.006G250300 pelota, putative, expressed K06965: PELO, DOM34, protein pelota
13 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
14 Sobic.006G179600 RWP-RK domain-containing protein, putative, expressed -
15 Sobic.008G144900 DUF221 domain containing protein, expressed -
16 Sobic.003G051700 universal stress protein domain containing protein, putative, expressed -
17 Sobic.003G026900 expressed protein -
18 Sobic.002G093900 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
19 Sobic.002G119400 protein kinase, putative, expressed K13436: pto-interacting protein 1
20 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase


Gene co-expression network
sample Sobic010G071600 Sobic010G071600 Sobic003G159500 Sobic003G159500 Sobic010G071600--Sobic003G159500 Sobic006G061100 Sobic006G061100 Sobic010G071600--Sobic006G061100 Sobic004G311400 Sobic004G311400 Sobic010G071600--Sobic004G311400 Sobic004G154300 Sobic004G154300 Sobic010G071600--Sobic004G154300 Sobic009G060300 Sobic009G060300 Sobic010G071600--Sobic009G060300 Sobic009G159000 Sobic009G159000 Sobic010G071600--Sobic009G159000 Sobic003G358200 Sobic003G358200 Sobic010G071600--Sobic003G358200 Sobic001G534600 Sobic001G534600 Sobic010G071600--Sobic001G534600 Sobic009G132650 Sobic009G132650 Sobic010G071600--Sobic009G132650 Sobic006G179600 Sobic006G179600 Sobic003G159500--Sobic006G179600 Sobic003G159500--Sobic006G061100 Sobic010G207400 Sobic010G207400 Sobic003G159500--Sobic010G207400 Sobic009G132600 Sobic009G132600 Sobic003G159500--Sobic009G132600 Sobic003G159500--Sobic010G071600 Sobic010G273800 Sobic010G273800 Sobic003G159500--Sobic010G273800 Sobic007G042300 Sobic007G042300 Sobic003G159500--Sobic007G042300 Sobic002G403200 Sobic002G403200 Sobic003G159500--Sobic002G403200 Sobic008G160500 Sobic008G160500 Sobic003G159500--Sobic008G160500 Sobic004G075700 Sobic004G075700 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic006G061100--Sobic009G060300 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic006G061100--Sobic004G154300 Sobic009G113100 Sobic009G113100 Sobic006G061100--Sobic009G113100 Sobic006G061100--Sobic004G311400 Sobic006G061100--Sobic009G132650 Sobic002G029100 Sobic002G029100 Sobic004G311400--Sobic002G029100 Sobic008G096000 Sobic008G096000 Sobic004G311400--Sobic008G096000 Sobic003G038100 Sobic003G038100 Sobic004G311400--Sobic003G038100 Sobic005G200800 Sobic005G200800 Sobic004G311400--Sobic005G200800 Sobic005G207500 Sobic005G207500 Sobic004G311400--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic004G311400--Sobic002G153700 Sobic002G245000 Sobic002G245000 Sobic004G311400--Sobic002G245000 Sobic003G214600 Sobic003G214600 Sobic004G311400--Sobic003G214600 Sobic010G089400 Sobic010G089400 Sobic004G311400--Sobic010G089400 Sobic004G154300--Sobic006G061100 Sobic004G282100 Sobic004G282100 Sobic004G154300--Sobic004G282100 Sobic003G150900 Sobic003G150900 Sobic004G154300--Sobic003G150900 Sobic006G141600 Sobic006G141600 Sobic004G154300--Sobic006G141600 Sobic001G168900 Sobic001G168900 Sobic004G154300--Sobic001G168900 Sobic002G292900 Sobic002G292900 Sobic004G154300--Sobic002G292900 Sobic001G458200 Sobic001G458200 Sobic004G154300--Sobic001G458200 Sobic004G154300--Sobic002G029100 Sobic006G245100 Sobic006G245100 Sobic004G154300--Sobic006G245100 Sobic009G060300--Sobic009G132650 Sobic004G071100 Sobic004G071100 Sobic009G060300--Sobic004G071100 Sobic005G033400 Sobic005G033400 Sobic009G060300--Sobic005G033400 Sobic004G029800 Sobic004G029800 Sobic009G060300--Sobic004G029800 Sobic002G286800 Sobic002G286800 Sobic009G060300--Sobic002G286800 Sobic006G081400 Sobic006G081400 Sobic009G060300--Sobic006G081400 Sobic005G185400 Sobic005G185400 Sobic009G060300--Sobic005G185400 Sobic005G184500 Sobic005G184500 Sobic009G060300--Sobic005G184500 Sobic005G188800 Sobic005G188800 Sobic009G060300--Sobic005G188800 Sobic002G223800 Sobic002G223800 Sobic009G159000--Sobic002G223800 Sobic008G058800 Sobic008G058800 Sobic009G159000--Sobic008G058800 Sobic004G323700 Sobic004G323700 Sobic009G159000--Sobic004G323700 Sobic004G320100 Sobic004G320100 Sobic009G159000--Sobic004G320100 Sobic001G542450 Sobic001G542450 Sobic009G159000--Sobic001G542450 Sobic001G135500 Sobic001G135500 Sobic009G159000--Sobic001G135500 Sobic003G212900 Sobic003G212900 Sobic009G159000--Sobic003G212900 Sobic002G313900 Sobic002G313900 Sobic009G159000--Sobic002G313900 Sobic001G005600 Sobic001G005600 Sobic009G159000--Sobic001G005600 Sobic010G093400 Sobic010G093400 Sobic003G358200--Sobic010G093400 Sobic002G420800 Sobic002G420800 Sobic003G358200--Sobic002G420800 Sobic007G152500 Sobic007G152500 Sobic003G358200--Sobic007G152500 Sobic006G164000 Sobic006G164000 Sobic003G358200--Sobic006G164000 Sobic001G067000 Sobic001G067000 Sobic003G358200--Sobic001G067000 Sobic001G379000 Sobic001G379000 Sobic003G358200--Sobic001G379000 Sobic001G294600 Sobic001G294600 Sobic003G358200--Sobic001G294600 Sobic001G419700 Sobic001G419700 Sobic003G358200--Sobic001G419700 Sobic003G358200--Sobic010G207400 Sobic001G534600--Sobic006G245100 Sobic010G086600 Sobic010G086600 Sobic001G534600--Sobic010G086600 Sobic008G053600 Sobic008G053600 Sobic001G534600--Sobic008G053600 Sobic004G145000 Sobic004G145000 Sobic001G534600--Sobic004G145000 Sobic005G074500 Sobic005G074500 Sobic001G534600--Sobic005G074500 Sobic003G194100 Sobic003G194100 Sobic001G534600--Sobic003G194100 Sobic001G003500 Sobic001G003500 Sobic001G534600--Sobic001G003500 Sobic002G119400 Sobic002G119400 Sobic001G534600--Sobic002G119400 Sobic005G158300 Sobic005G158300 Sobic001G534600--Sobic005G158300 Sobic005G176875 Sobic005G176875 Sobic009G132650--Sobic005G176875 Sobic009G132650--Sobic009G060300 Sobic002G273000 Sobic002G273000 Sobic009G132650--Sobic002G273000 Sobic009G132650--Sobic004G071100 Sobic002G015500 Sobic002G015500 Sobic009G132650--Sobic002G015500 Sobic009G132650--Sobic005G184500 Sobic008G184500 Sobic008G184500 Sobic009G132650--Sobic008G184500 Sobic009G132650--Sobic005G033400 Sobic003G319050 Sobic003G319050 Sobic009G132650--Sobic003G319050
Octagon: transcription factors


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