Gene annotation
Transcriptome id Sobic.001G534600.2,Sobic.001G534600.1
Synonym Sb01g049760
Functional annotation transmembrane and coiled-coil domain-containing protein 4, putative, expressed
UniProt A0A1Z5SC23 , A0A1Z5SBV3
Pfam PF05277
Panther DB PTHR17920:SF7 PTHR17920
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G36210 : Protein of unknown function (DUF726)
RAP-DB (Rice) LOC_Os03g02170.2 : transmembrane and coiled-coil domain-containing protein 4, putative, expressed
MaizeGDB (Corn) Zm00025a053531
Brachypodium KQK24037
Barley HORVU4Hr1G089280.13 , HORVU4Hr1G089280.12 , HORVU4Hr1G089280.11 , HORVU4Hr1G089280.10 , HORVU4Hr1G089280.15 , HORVU4Hr1G089280.14 , HORVU4Hr1G089280.9 , HORVU4Hr1G089280.8 , HORVU4Hr1G089280.3 , HORVU4Hr1G089280.2 , HORVU4Hr1G089280.1 , HORVU4Hr1G089280.7 , HORVU4Hr1G089280.6 , HORVU4Hr1G089280.5 , HORVU4Hr1G089280.4 , HORVU1Hr1G047260.6 , HORVU1Hr1G047260.7 , HORVU1Hr1G047260.4 , HORVU1Hr1G047260.2 , HORVU1Hr1G047260.3 , HORVU1Hr1G047260.1
Wheat TraesCS1B02G202300 , TraesCS1A02G178000 , TraesCSU02G031200 , TraesCS1D02G176500 , TraesCS4B02G395900 , TraesCS5A02G557500
Populus -


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cDNA sequences
Sobic.001G534600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G245100 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
2 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
3 Sobic.008G053600 alpha-1,4-fucosyltransferase, putative, expressed K14412: FUT13, alpha-1,4-fucosyltransferase
4 Sobic.004G145000 importin-8, putative, expressed -
5 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
6 Sobic.003G194100 mitochondrial carrier protein, putative, expressed K15084: SLC25A16, GDA, solute carrier family 25 (mitochondrial carrier protein), member 16
7 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
8 Sobic.002G119400 protein kinase, putative, expressed K13436: pto-interacting protein 1
9 Sobic.005G158300 RWD domain containing protein, expressed K10640: RNF25, E3 ubiquitin-protein ligase RNF25
10 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
11 Sobic.010G089400 TLD family protein, putative, expressed -
12 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
13 Sobic.001G296900 dual specificity protein phosphatase, putative, expressed -
14 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
15 Sobic.001G426100 enolase, putative, expressed K01689: ENO, enolase
16 Sobic.001G430400 Ser/Thr protein phosphatase family protein, putative, expressed -
17 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
18 Sobic.008G185500 zinc finger, putative, expressed -
19 Sobic.004G176400 ATP binding protein, putative, expressed K06883: uncharacterized protein
20 Sobic.002G009200 - K15456: protein KTI12


Gene co-expression network
sample Sobic001G534600 Sobic001G534600 Sobic006G245100 Sobic006G245100 Sobic001G534600--Sobic006G245100 Sobic010G086600 Sobic010G086600 Sobic001G534600--Sobic010G086600 Sobic008G053600 Sobic008G053600 Sobic001G534600--Sobic008G053600 Sobic004G145000 Sobic004G145000 Sobic001G534600--Sobic004G145000 Sobic005G074500 Sobic005G074500 Sobic001G534600--Sobic005G074500 Sobic003G194100 Sobic003G194100 Sobic001G534600--Sobic003G194100 Sobic001G003500 Sobic001G003500 Sobic001G534600--Sobic001G003500 Sobic002G119400 Sobic002G119400 Sobic001G534600--Sobic002G119400 Sobic005G158300 Sobic005G158300 Sobic001G534600--Sobic005G158300 Sobic006G245100--Sobic001G534600 Sobic006G245100--Sobic002G119400 Sobic004G154300 Sobic004G154300 Sobic006G245100--Sobic004G154300 Sobic002G105200 Sobic002G105200 Sobic006G245100--Sobic002G105200 Sobic010G186600 Sobic010G186600 Sobic006G245100--Sobic010G186600 Sobic006G087100 Sobic006G087100 Sobic006G245100--Sobic006G087100 Sobic004G091200 Sobic004G091200 Sobic006G245100--Sobic004G091200 Sobic001G039500 Sobic001G039500 Sobic006G245100--Sobic001G039500 Sobic002G029100 Sobic002G029100 Sobic006G245100--Sobic002G029100 Sobic007G042900 Sobic007G042900 Sobic010G086600--Sobic007G042900 Sobic002G193300 Sobic002G193300 Sobic010G086600--Sobic002G193300 Sobic001G542450 Sobic001G542450 Sobic010G086600--Sobic001G542450 Sobic008G002300 Sobic008G002300 Sobic010G086600--Sobic008G002300 Sobic002G292900 Sobic002G292900 Sobic010G086600--Sobic002G292900 Sobic010G089400 Sobic010G089400 Sobic010G086600--Sobic010G089400 Sobic002G371300 Sobic002G371300 Sobic010G086600--Sobic002G371300 Sobic006G088200 Sobic006G088200 Sobic010G086600--Sobic006G088200 Sobic007G180600 Sobic007G180600 Sobic010G086600--Sobic007G180600 Sobic008G185500 Sobic008G185500 Sobic008G053600--Sobic008G185500 Sobic003G436300 Sobic003G436300 Sobic008G053600--Sobic003G436300 Sobic008G053600--Sobic004G091200 Sobic001G005600 Sobic001G005600 Sobic008G053600--Sobic001G005600 Sobic002G348600 Sobic002G348600 Sobic008G053600--Sobic002G348600 Sobic008G053600--Sobic001G534600 Sobic010G176500 Sobic010G176500 Sobic008G053600--Sobic010G176500 Sobic008G053600--Sobic005G074500 Sobic004G068500 Sobic004G068500 Sobic008G053600--Sobic004G068500 Sobic006G139100 Sobic006G139100 Sobic004G145000--Sobic006G139100 Sobic004G340400 Sobic004G340400 Sobic004G145000--Sobic004G340400 Sobic006G034500 Sobic006G034500 Sobic004G145000--Sobic006G034500 Sobic001G447300 Sobic001G447300 Sobic004G145000--Sobic001G447300 Sobic001G455800 Sobic001G455800 Sobic004G145000--Sobic001G455800 Sobic002G256700 Sobic002G256700 Sobic004G145000--Sobic002G256700 Sobic003G036400 Sobic003G036400 Sobic004G145000--Sobic003G036400 Sobic003G104000 Sobic003G104000 Sobic004G145000--Sobic003G104000 Sobic006G166200 Sobic006G166200 Sobic004G145000--Sobic006G166200 Sobic008G103300 Sobic008G103300 Sobic005G074500--Sobic008G103300 Sobic003G312200 Sobic003G312200 Sobic005G074500--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic005G074500--Sobic001G206900 Sobic001G449900 Sobic001G449900 Sobic005G074500--Sobic001G449900 Sobic003G337300 Sobic003G337300 Sobic005G074500--Sobic003G337300 Sobic001G426100 Sobic001G426100 Sobic005G074500--Sobic001G426100 Sobic004G323700 Sobic004G323700 Sobic005G074500--Sobic004G323700 Sobic001G431000 Sobic001G431000 Sobic005G074500--Sobic001G431000 Sobic010G020300 Sobic010G020300 Sobic005G074500--Sobic010G020300 Sobic006G280000 Sobic006G280000 Sobic003G194100--Sobic006G280000 Sobic003G194100--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic003G194100--Sobic007G005500 Sobic003G194100--Sobic004G145000 Sobic004G261600 Sobic004G261600 Sobic003G194100--Sobic004G261600 Sobic003G194100--Sobic002G256700 Sobic004G322400 Sobic004G322400 Sobic003G194100--Sobic004G322400 Sobic003G209200 Sobic003G209200 Sobic003G194100--Sobic003G209200 Sobic003G194100--Sobic003G337300 Sobic004G321700 Sobic004G321700 Sobic001G003500--Sobic004G321700 Sobic008G147200 Sobic008G147200 Sobic001G003500--Sobic008G147200 Sobic002G052700 Sobic002G052700 Sobic001G003500--Sobic002G052700 Sobic001G291800 Sobic001G291800 Sobic001G003500--Sobic001G291800 Sobic005G220000 Sobic005G220000 Sobic001G003500--Sobic005G220000 Sobic010G007100 Sobic010G007100 Sobic001G003500--Sobic010G007100 Sobic004G357400 Sobic004G357400 Sobic001G003500--Sobic004G357400 Sobic004G095300 Sobic004G095300 Sobic001G003500--Sobic004G095300 Sobic006G125900 Sobic006G125900 Sobic001G003500--Sobic006G125900 Sobic004G311900 Sobic004G311900 Sobic002G119400--Sobic004G311900 Sobic002G119400--Sobic010G186600 Sobic001G168900 Sobic001G168900 Sobic002G119400--Sobic001G168900 Sobic004G353000 Sobic004G353000 Sobic002G119400--Sobic004G353000 Sobic009G050700 Sobic009G050700 Sobic002G119400--Sobic009G050700 Sobic004G176400 Sobic004G176400 Sobic002G119400--Sobic004G176400 Sobic006G186800 Sobic006G186800 Sobic002G119400--Sobic006G186800 Sobic006G250300 Sobic006G250300 Sobic002G119400--Sobic006G250300 Sobic009G258400 Sobic009G258400 Sobic002G119400--Sobic009G258400 Sobic009G131900 Sobic009G131900 Sobic005G158300--Sobic009G131900 Sobic005G160400 Sobic005G160400 Sobic005G158300--Sobic005G160400 Sobic008G124900 Sobic008G124900 Sobic005G158300--Sobic008G124900 Sobic009G092400 Sobic009G092400 Sobic005G158300--Sobic009G092400 Sobic010G209000 Sobic010G209000 Sobic005G158300--Sobic010G209000 Sobic004G252900 Sobic004G252900 Sobic005G158300--Sobic004G252900 Sobic002G047700 Sobic002G047700 Sobic005G158300--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic005G158300--Sobic006G180000 Sobic003G121300 Sobic003G121300 Sobic005G158300--Sobic003G121300
Octagon: transcription factors


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