Gene annotation
Transcriptome id Sobic.006G245100.1
Synonym CAX2, Sb06g031080, atcax2
Functional annotation Ca exchanger (PubMedID : 22196357)
sodium/calcium exchanger protein, putative, expressed
UniProt A0A1B6PNP6
Pfam PF01699
Panther DB PTHR31503 PTHR31503:SF11
NCBI CDD KOG1397; Ca2+/H+ antiporter VCX1 and related proteins
KEGG Orthology K07300; chaA, Ca2+:H+ antiporter
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G13320 : cation exchanger 2
RAP-DB (Rice) LOC_Os04g55940.1 : sodium/calcium exchanger protein, putative, expressed
MaizeGDB (Corn) Zm00025a009485 , Zm00025a057240
Brachypodium KQJ85022
Barley HORVU2Hr1G112420.10 , HORVU4Hr1G037210.9 , HORVU4Hr1G037210.8 , HORVU4Hr1G037210.5 , HORVU4Hr1G037210.4 , HORVU4Hr1G037210.7 , HORVU4Hr1G037210.6 , HORVU4Hr1G037210.1 , HORVU4Hr1G037210.3 , HORVU4Hr1G037210.2 , HORVU2Hr1G112420.6 , HORVU2Hr1G112420.7 , HORVU2Hr1G112420.4 , HORVU2Hr1G112420.5 , HORVU2Hr1G112420.2 , HORVU2Hr1G112420.3 , HORVU2Hr1G112420.1 , HORVU2Hr1G112420.8 , HORVU2Hr1G112420.9 , HORVU4Hr1G037210.10
Wheat TraesCS6A02G108700 , TraesCS6A02G108700 , TraesCS4D02G156900 , TraesCS4D02G156900 , TraesCS4A02G156500 , TraesCS2B02G534600 , TraesCS4B02G161500 , TraesCS4B02G161500 , TraesCS4B02G161500 , TraesCS2D02G507000 , TraesCS2A02G506200 , TraesCS2A02G506200
Populus -


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cDNA sequences
Sobic.006G245100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G534600 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
2 Sobic.002G119400 protein kinase, putative, expressed K13436: pto-interacting protein 1
3 Sobic.004G154300 ThiF family domain containing protein, putative, expressed K12164: UBA5, ubiquitin-like modifier-activating enzyme 5
4 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
5 Sobic.010G186600 expressed protein -
6 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
7 Sobic.004G091200 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
8 Sobic.001G039500 protein kinase domain containing protein, expressed -
9 Sobic.002G029100 GYF domain containing protein, putative, expressed -
10 Sobic.004G320100 expressed protein -
11 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
12 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
13 Sobic.006G250300 pelota, putative, expressed K06965: PELO, DOM34, protein pelota
14 Sobic.001G218800 expressed protein -
15 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
17 Sobic.006G186800 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K12345: 3-oxo-5-alpha-steroid 4-dehydrogenase 3 / polyprenol reductase
18 Sobic.004G023900 3-isopropylmalate dehydratase large subunit 2, putative, expressed K01703: leuC, 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
19 Sobic.002G164200 PFT1, putative, expressed K15168: mediator of RNA polymerase II transcription subunit 25
20 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase


Gene co-expression network
sample Sobic006G245100 Sobic006G245100 Sobic001G534600 Sobic001G534600 Sobic006G245100--Sobic001G534600 Sobic002G119400 Sobic002G119400 Sobic006G245100--Sobic002G119400 Sobic004G154300 Sobic004G154300 Sobic006G245100--Sobic004G154300 Sobic002G105200 Sobic002G105200 Sobic006G245100--Sobic002G105200 Sobic010G186600 Sobic010G186600 Sobic006G245100--Sobic010G186600 Sobic006G087100 Sobic006G087100 Sobic006G245100--Sobic006G087100 Sobic004G091200 Sobic004G091200 Sobic006G245100--Sobic004G091200 Sobic001G039500 Sobic001G039500 Sobic006G245100--Sobic001G039500 Sobic002G029100 Sobic002G029100 Sobic006G245100--Sobic002G029100 Sobic001G534600--Sobic006G245100 Sobic010G086600 Sobic010G086600 Sobic001G534600--Sobic010G086600 Sobic008G053600 Sobic008G053600 Sobic001G534600--Sobic008G053600 Sobic004G145000 Sobic004G145000 Sobic001G534600--Sobic004G145000 Sobic005G074500 Sobic005G074500 Sobic001G534600--Sobic005G074500 Sobic003G194100 Sobic003G194100 Sobic001G534600--Sobic003G194100 Sobic001G003500 Sobic001G003500 Sobic001G534600--Sobic001G003500 Sobic001G534600--Sobic002G119400 Sobic005G158300 Sobic005G158300 Sobic001G534600--Sobic005G158300 Sobic004G311900 Sobic004G311900 Sobic002G119400--Sobic004G311900 Sobic002G119400--Sobic010G186600 Sobic001G168900 Sobic001G168900 Sobic002G119400--Sobic001G168900 Sobic004G353000 Sobic004G353000 Sobic002G119400--Sobic004G353000 Sobic009G050700 Sobic009G050700 Sobic002G119400--Sobic009G050700 Sobic004G176400 Sobic004G176400 Sobic002G119400--Sobic004G176400 Sobic006G186800 Sobic006G186800 Sobic002G119400--Sobic006G186800 Sobic006G250300 Sobic006G250300 Sobic002G119400--Sobic006G250300 Sobic009G258400 Sobic009G258400 Sobic002G119400--Sobic009G258400 Sobic006G061100 Sobic006G061100 Sobic004G154300--Sobic006G061100 Sobic004G282100 Sobic004G282100 Sobic004G154300--Sobic004G282100 Sobic003G150900 Sobic003G150900 Sobic004G154300--Sobic003G150900 Sobic006G141600 Sobic006G141600 Sobic004G154300--Sobic006G141600 Sobic004G154300--Sobic001G168900 Sobic002G292900 Sobic002G292900 Sobic004G154300--Sobic002G292900 Sobic001G458200 Sobic001G458200 Sobic004G154300--Sobic001G458200 Sobic004G154300--Sobic002G029100 Sobic004G154300--Sobic006G245100 Sobic002G382600 Sobic002G382600 Sobic002G105200--Sobic002G382600 Sobic003G416400 Sobic003G416400 Sobic002G105200--Sobic003G416400 Sobic004G237400 Sobic004G237400 Sobic002G105200--Sobic004G237400 Sobic003G053800 Sobic003G053800 Sobic002G105200--Sobic003G053800 Sobic010G020300 Sobic010G020300 Sobic002G105200--Sobic010G020300 Sobic003G352200 Sobic003G352200 Sobic002G105200--Sobic003G352200 Sobic001G296900 Sobic001G296900 Sobic002G105200--Sobic001G296900 Sobic001G473600 Sobic001G473600 Sobic002G105200--Sobic001G473600 Sobic002G105200--Sobic004G091200 Sobic009G255600 Sobic009G255600 Sobic010G186600--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic010G186600--Sobic008G147200 Sobic002G145800 Sobic002G145800 Sobic010G186600--Sobic002G145800 Sobic001G291800 Sobic001G291800 Sobic010G186600--Sobic001G291800 Sobic002G005000 Sobic002G005000 Sobic010G186600--Sobic002G005000 Sobic001G023800 Sobic001G023800 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic010G220900 Sobic010G220900 Sobic006G087100--Sobic010G220900 Sobic004G019600 Sobic004G019600 Sobic006G087100--Sobic004G019600 Sobic001G346300 Sobic001G346300 Sobic006G087100--Sobic001G346300 Sobic009G108500 Sobic009G108500 Sobic006G087100--Sobic009G108500 Sobic008G118500 Sobic008G118500 Sobic006G087100--Sobic008G118500 Sobic004G133700 Sobic004G133700 Sobic006G087100--Sobic004G133700 Sobic001G218800 Sobic001G218800 Sobic006G087100--Sobic001G218800 Sobic003G122000 Sobic003G122000 Sobic006G087100--Sobic003G122000 Sobic002G359900 Sobic002G359900 Sobic006G087100--Sobic002G359900 Sobic004G091200--Sobic009G258400 Sobic001G005600 Sobic001G005600 Sobic004G091200--Sobic001G005600 Sobic003G005200 Sobic003G005200 Sobic004G091200--Sobic003G005200 Sobic010G129600 Sobic010G129600 Sobic004G091200--Sobic010G129600 Sobic004G091200--Sobic001G473600 Sobic001G114500 Sobic001G114500 Sobic004G091200--Sobic001G114500 Sobic004G091200--Sobic002G105200 Sobic003G201900 Sobic003G201900 Sobic004G091200--Sobic003G201900 Sobic003G038600 Sobic003G038600 Sobic004G091200--Sobic003G038600 Sobic010G015900 Sobic010G015900 Sobic001G039500--Sobic010G015900 Sobic004G023900 Sobic004G023900 Sobic001G039500--Sobic004G023900 Sobic002G400400 Sobic002G400400 Sobic001G039500--Sobic002G400400 Sobic003G159500 Sobic003G159500 Sobic001G039500--Sobic003G159500 Sobic001G039500--Sobic006G245100 Sobic008G115000 Sobic008G115000 Sobic001G039500--Sobic008G115000 Sobic007G041300 Sobic007G041300 Sobic001G039500--Sobic007G041300 Sobic006G120800 Sobic006G120800 Sobic001G039500--Sobic006G120800 Sobic001G033400 Sobic001G033400 Sobic001G039500--Sobic001G033400 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic003G214600 Sobic003G214600 Sobic002G029100--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic002G029100--Sobic005G200800 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G245000 Sobic002G245000 Sobic002G029100--Sobic002G245000 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300
Octagon: transcription factors


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