Gene annotation
Transcriptome id Sobic.004G091200.1
Synonym ATHD1, HDA19, Sb04g007470, HD1, RPD3A, HDA1, ATHDA19
Functional annotation histone deacetylase 19, putative, expressed
UniProt C5XY14
Pfam PF00850
Panther DB PTHR10625 PTHR10625:SF127
NCBI CDD -
KEGG Orthology K06067; histone deacetylase 1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38130 : histone deacetylase 1
RAP-DB (Rice) LOC_Os06g38470.1 : histone deacetylase 19, putative, expressed
MaizeGDB (Corn) Zm00025a020206 , Zm00025a051169 , Zm00025a034574
Brachypodium PNT75718 , KQK17869 , KQK17870 , KQJ94026 , KQJ99706
Barley HORVU7Hr1G085870.9 , HORVU7Hr1G085870.8 , HORVU7Hr1G085870.7 , HORVU7Hr1G085870.6 , HORVU7Hr1G085870.5 , HORVU7Hr1G085870.4 , HORVU7Hr1G085870.3 , HORVU7Hr1G085870.2 , HORVU7Hr1G085870.1 , HORVU5Hr1G077760.1 , HORVU5Hr1G077800.1 , HORVU6Hr1G038710.6 , HORVU6Hr1G038710.5 , HORVU6Hr1G038710.4 , HORVU6Hr1G038710.3 , HORVU6Hr1G038710.2 , HORVU6Hr1G038710.1
Wheat TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7D02G356800 , TraesCS6B02G212600 , TraesCS6B02G212600 , TraesCS6B02G212600 , TraesCS6B02G212600 , TraesCS6B02G210200 , TraesCS6B02G210200 , TraesCS6B02G212600 , TraesCS4B02G102600 , TraesCS4D02G100000 , TraesCS7B02G261800 , TraesCS6D02G171000 , TraesCS6D02G171000 , TraesCS6D02G171000 , TraesCS6D02G171000 , TraesCS6A02G184100 , TraesCS6A02G184100
Populus -


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cDNA sequences
Sobic.004G091200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
2 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
3 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
4 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
5 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
6 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
7 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
8 Sobic.003G201900 coiled-coil domain-containing protein, putative, expressed -
9 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
10 Sobic.001G497900 XS domain containing protein, expressed -
11 Sobic.003G436300 expressed protein -
12 Sobic.002G314900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G146900 lipase class 3 family protein, putative, expressed -
14 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
15 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
16 Sobic.009G160600 Yip1 domain containing protein, expressed -
17 Sobic.001G218800 expressed protein -
18 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C
19 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
20 Sobic.008G053600 alpha-1,4-fucosyltransferase, putative, expressed K14412: FUT13, alpha-1,4-fucosyltransferase


Gene co-expression network
sample Sobic004G091200 Sobic004G091200 Sobic009G258400 Sobic009G258400 Sobic004G091200--Sobic009G258400 Sobic001G005600 Sobic001G005600 Sobic004G091200--Sobic001G005600 Sobic003G005200 Sobic003G005200 Sobic004G091200--Sobic003G005200 Sobic010G129600 Sobic010G129600 Sobic004G091200--Sobic010G129600 Sobic001G473600 Sobic001G473600 Sobic004G091200--Sobic001G473600 Sobic001G114500 Sobic001G114500 Sobic004G091200--Sobic001G114500 Sobic002G105200 Sobic002G105200 Sobic004G091200--Sobic002G105200 Sobic003G201900 Sobic003G201900 Sobic004G091200--Sobic003G201900 Sobic003G038600 Sobic003G038600 Sobic004G091200--Sobic003G038600 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic009G258400--Sobic004G091200 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic003G132000 Sobic003G132000 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400 Sobic009G160600 Sobic009G160600 Sobic001G005600--Sobic009G160600 Sobic001G005600--Sobic010G129600 Sobic007G042900 Sobic007G042900 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic003G150900 Sobic003G150900 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic004G068500 Sobic004G068500 Sobic001G005600--Sobic004G068500 Sobic008G021000 Sobic008G021000 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic002G300700 Sobic002G300700 Sobic003G005200--Sobic002G300700 Sobic003G005200--Sobic009G160600 Sobic001G360200 Sobic001G360200 Sobic003G005200--Sobic001G360200 Sobic006G225300 Sobic006G225300 Sobic003G005200--Sobic006G225300 Sobic002G281300 Sobic002G281300 Sobic003G005200--Sobic002G281300 Sobic003G005200--Sobic004G091200 Sobic003G005200--Sobic003G038600 Sobic003G021200 Sobic003G021200 Sobic003G005200--Sobic003G021200 Sobic009G058500 Sobic009G058500 Sobic003G005200--Sobic009G058500 Sobic010G129600--Sobic001G005600 Sobic010G129600--Sobic001G161900 Sobic001G313500 Sobic001G313500 Sobic010G129600--Sobic001G313500 Sobic006G271200 Sobic006G271200 Sobic010G129600--Sobic006G271200 Sobic010G129600--Sobic004G091200 Sobic010G261600 Sobic010G261600 Sobic010G129600--Sobic010G261600 Sobic010G129600--Sobic009G160600 Sobic006G237900 Sobic006G237900 Sobic010G129600--Sobic006G237900 Sobic008G061100 Sobic008G061100 Sobic010G129600--Sobic008G061100 Sobic002G034600 Sobic002G034600 Sobic001G473600--Sobic002G034600 Sobic003G352200 Sobic003G352200 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G088100 Sobic001G088100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G114500--Sobic001G473600 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic002G382600 Sobic002G382600 Sobic002G105200--Sobic002G382600 Sobic003G416400 Sobic003G416400 Sobic002G105200--Sobic003G416400 Sobic004G237400 Sobic004G237400 Sobic002G105200--Sobic004G237400 Sobic003G053800 Sobic003G053800 Sobic002G105200--Sobic003G053800 Sobic010G020300 Sobic010G020300 Sobic002G105200--Sobic010G020300 Sobic002G105200--Sobic003G352200 Sobic001G296900 Sobic001G296900 Sobic002G105200--Sobic001G296900 Sobic002G105200--Sobic001G473600 Sobic002G105200--Sobic004G091200 Sobic003G201900--Sobic006G225300 Sobic002G385900 Sobic002G385900 Sobic003G201900--Sobic002G385900 Sobic002G256300 Sobic002G256300 Sobic003G201900--Sobic002G256300 Sobic003G201900--Sobic003G416400 Sobic003G312200 Sobic003G312200 Sobic003G201900--Sobic003G312200 Sobic007G139700 Sobic007G139700 Sobic003G201900--Sobic007G139700 Sobic003G201900--Sobic001G313500 Sobic009G135600 Sobic009G135600 Sobic003G201900--Sobic009G135600 Sobic003G201900--Sobic001G114500 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200
Octagon: transcription factors


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