Gene annotation
Transcriptome id Sobic.006G186800.1
Synonym
Functional annotation 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
UniProt C6JSE1 , A0A109ND81
Pfam PF02544
Panther DB PTHR14624
NCBI CDD KOG1640; Predicted steroid reductase
KEGG Orthology K12345; 3-oxo-5-alpha-steroid 4-dehydrogenase 3 / polyprenol reductase
Gene Ontology GO:0016627; oxidoreductase activity, acting on the CH-CH group of donors GO:0016021integral component of membrane GO:0006629lipid metabolic process GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT2G16530 : 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g48750.1 : 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a056743 , Zm00025a010126
Brachypodium KQJ84148 , KQJ84147 , KQJ84146
Barley HORVU2Hr1G094380.8 , HORVU2Hr1G094380.9 , HORVU2Hr1G094380.6 , HORVU2Hr1G094380.7 , HORVU2Hr1G094380.4 , HORVU2Hr1G094380.5 , HORVU2Hr1G094380.2 , HORVU2Hr1G094380.3 , HORVU2Hr1G094380.13 , HORVU2Hr1G094380.1 , HORVU2Hr1G094380.14 , HORVU2Hr1G094380.10 , HORVU2Hr1G094380.11 , HORVU2Hr1G094380.12
Wheat TraesCS2A02G397300 , TraesCS2A02G397300 , TraesCS2A02G397300 , TraesCS2B02G415600 , TraesCS2D02G395100 , TraesCS2D02G395100 , TraesCS2D02G395100
Populus -


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cDNA sequences
Sobic.006G186800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G119400 protein kinase, putative, expressed K13436: pto-interacting protein 1
2 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase
3 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
4 Sobic.006G245100 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
5 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
6 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
7 Sobic.005G187500 GRF-interacting factor 2, putative, expressed -
8 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
9 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
10 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
11 Sobic.003G218300 C-5 cytosine-specific DNA methylase, putative, expressed K15336: TRDMT1, tRNA (cytosine38-C5)-methyltransferase
12 Sobic.003G186700 ubiquitin carboxyl-terminal hydrolase 6, putative, expressed K11843: USP14, ubiquitin carboxyl-terminal hydrolase 14
13 Sobic.006G183000 RING zinc finger protein, putative, expressed -
14 Sobic.005G158300 RWD domain containing protein, expressed K10640: RNF25, E3 ubiquitin-protein ligase RNF25
15 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
16 Sobic.006G002201 - -
17 Sobic.009G050700 importin subunit alpha, putative, expressed -
18 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
19 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
20 Sobic.001G085100 expressed protein -


Gene co-expression network
sample Sobic006G186800 Sobic006G186800 Sobic002G119400 Sobic002G119400 Sobic006G186800--Sobic002G119400 Sobic008G162000 Sobic008G162000 Sobic006G186800--Sobic008G162000 Sobic001G506000 Sobic001G506000 Sobic006G186800--Sobic001G506000 Sobic006G245100 Sobic006G245100 Sobic006G186800--Sobic006G245100 Sobic006G211800 Sobic006G211800 Sobic006G186800--Sobic006G211800 Sobic003G043400 Sobic003G043400 Sobic006G186800--Sobic003G043400 Sobic005G187500 Sobic005G187500 Sobic006G186800--Sobic005G187500 Sobic007G079300 Sobic007G079300 Sobic006G186800--Sobic007G079300 Sobic001G114500 Sobic001G114500 Sobic006G186800--Sobic001G114500 Sobic004G311900 Sobic004G311900 Sobic002G119400--Sobic004G311900 Sobic010G186600 Sobic010G186600 Sobic002G119400--Sobic010G186600 Sobic001G168900 Sobic001G168900 Sobic002G119400--Sobic001G168900 Sobic004G353000 Sobic004G353000 Sobic002G119400--Sobic004G353000 Sobic009G050700 Sobic009G050700 Sobic002G119400--Sobic009G050700 Sobic004G176400 Sobic004G176400 Sobic002G119400--Sobic004G176400 Sobic002G119400--Sobic006G186800 Sobic006G250300 Sobic006G250300 Sobic002G119400--Sobic006G250300 Sobic009G258400 Sobic009G258400 Sobic002G119400--Sobic009G258400 Sobic002G044000 Sobic002G044000 Sobic008G162000--Sobic002G044000 Sobic007G152400 Sobic007G152400 Sobic008G162000--Sobic007G152400 Sobic009G070200 Sobic009G070200 Sobic008G162000--Sobic009G070200 Sobic006G095200 Sobic006G095200 Sobic008G162000--Sobic006G095200 Sobic004G282100 Sobic004G282100 Sobic008G162000--Sobic004G282100 Sobic009G201800 Sobic009G201800 Sobic008G162000--Sobic009G201800 Sobic001G458200 Sobic001G458200 Sobic008G162000--Sobic001G458200 Sobic002G093900 Sobic002G093900 Sobic008G162000--Sobic002G093900 Sobic004G204800 Sobic004G204800 Sobic008G162000--Sobic004G204800 Sobic001G487100 Sobic001G487100 Sobic001G506000--Sobic001G487100 Sobic004G075200 Sobic004G075200 Sobic001G506000--Sobic004G075200 Sobic001G115500 Sobic001G115500 Sobic001G506000--Sobic001G115500 Sobic005G175000 Sobic005G175000 Sobic001G506000--Sobic005G175000 Sobic009G207200 Sobic009G207200 Sobic001G506000--Sobic009G207200 Sobic003G122000 Sobic003G122000 Sobic001G506000--Sobic003G122000 Sobic001G469200 Sobic001G469200 Sobic001G506000--Sobic001G469200 Sobic007G165300 Sobic007G165300 Sobic001G506000--Sobic007G165300 Sobic002G280900 Sobic002G280900 Sobic001G506000--Sobic002G280900 Sobic001G534600 Sobic001G534600 Sobic006G245100--Sobic001G534600 Sobic006G245100--Sobic002G119400 Sobic004G154300 Sobic004G154300 Sobic006G245100--Sobic004G154300 Sobic002G105200 Sobic002G105200 Sobic006G245100--Sobic002G105200 Sobic006G245100--Sobic010G186600 Sobic006G087100 Sobic006G087100 Sobic006G245100--Sobic006G087100 Sobic004G091200 Sobic004G091200 Sobic006G245100--Sobic004G091200 Sobic001G039500 Sobic001G039500 Sobic006G245100--Sobic001G039500 Sobic002G029100 Sobic002G029100 Sobic006G245100--Sobic002G029100 Sobic002G428200 Sobic002G428200 Sobic006G211800--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic006G211800--Sobic007G176200 Sobic002G423800 Sobic002G423800 Sobic006G211800--Sobic002G423800 Sobic006G252200 Sobic006G252200 Sobic006G211800--Sobic006G252200 Sobic005G105500 Sobic005G105500 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic001G038100 Sobic001G038100 Sobic005G187500--Sobic001G038100 Sobic002G204000 Sobic002G204000 Sobic005G187500--Sobic002G204000 Sobic003G405700 Sobic003G405700 Sobic005G187500--Sobic003G405700 Sobic001G507400 Sobic001G507400 Sobic005G187500--Sobic001G507400 Sobic006G120800 Sobic006G120800 Sobic005G187500--Sobic006G120800 Sobic006G183000 Sobic006G183000 Sobic005G187500--Sobic006G183000 Sobic003G307900 Sobic003G307900 Sobic005G187500--Sobic003G307900 Sobic002G359900 Sobic002G359900 Sobic005G187500--Sobic002G359900 Sobic001G199300 Sobic001G199300 Sobic005G187500--Sobic001G199300 Sobic002G071000 Sobic002G071000 Sobic007G079300--Sobic002G071000 Sobic004G348900 Sobic004G348900 Sobic007G079300--Sobic004G348900 Sobic001G283200 Sobic001G283200 Sobic007G079300--Sobic001G283200 Sobic001G234200 Sobic001G234200 Sobic007G079300--Sobic001G234200 Sobic001G206900 Sobic001G206900 Sobic007G079300--Sobic001G206900 Sobic004G082900 Sobic004G082900 Sobic007G079300--Sobic004G082900 Sobic007G079300--Sobic001G444300 Sobic002G020700 Sobic002G020700 Sobic007G079300--Sobic002G020700 Sobic001G014800 Sobic001G014800 Sobic007G079300--Sobic001G014800 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800
Octagon: transcription factors


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