Gene annotation
Transcriptome id Sobic.002G009200.1
Synonym DRL1, Sb02g001010
Functional annotation -
UniProt C5X798
Pfam PF13671
Panther DB PTHR12435 PTHR12435:SF2
NCBI CDD KOG3062; RNA polymerase II elongator associated protein
KEGG Orthology K15456; protein KTI12
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13870 : calmodulin binding;purine nucleotide binding
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a044887
Brachypodium KQK12408 , KQK12407
Barley HORVU5Hr1G114150.10 , HORVU5Hr1G114150.8 , HORVU5Hr1G114150.3 , HORVU5Hr1G114150.2 , HORVU5Hr1G114150.1 , HORVU5Hr1G114150.7 , HORVU5Hr1G114150.6 , HORVU5Hr1G114150.5 , HORVU5Hr1G114150.4
Wheat TraesCS5D02G497400 , TraesCS5A02G483800 , TraesCS5D02G497400 , TraesCS5D02G497400 , TraesCS5B02G497100 , TraesCS5B02G497100 , TraesCS5B02G497100 , TraesCS5A02G483800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G009200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
2 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
3 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
4 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
5 Sobic.007G084100 expressed protein -
6 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
7 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
8 Sobic.004G030800 expressed protein -
9 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
10 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
11 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
12 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
13 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
14 Sobic.004G185800 expressed protein -
15 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
16 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.003G289500 selenium-binding protein, related, putative, expressed -
18 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
19 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
20 Sobic.010G186600 expressed protein -


Gene co-expression network
sample Sobic002G009200 Sobic002G009200 Sobic008G051200 Sobic008G051200 Sobic002G009200--Sobic008G051200 Sobic001G114500 Sobic001G114500 Sobic002G009200--Sobic001G114500 Sobic001G251100 Sobic001G251100 Sobic002G009200--Sobic001G251100 Sobic001G003500 Sobic001G003500 Sobic002G009200--Sobic001G003500 Sobic007G084100 Sobic007G084100 Sobic002G009200--Sobic007G084100 Sobic006G010000 Sobic006G010000 Sobic002G009200--Sobic006G010000 Sobic003G293300 Sobic003G293300 Sobic002G009200--Sobic003G293300 Sobic004G030800 Sobic004G030800 Sobic002G009200--Sobic004G030800 Sobic001G259000 Sobic001G259000 Sobic002G009200--Sobic001G259000 Sobic004G171200 Sobic004G171200 Sobic008G051200--Sobic004G171200 Sobic008G051200--Sobic001G251100 Sobic006G125900 Sobic006G125900 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic001G493200 Sobic001G493200 Sobic008G051200--Sobic001G493200 Sobic001G089600 Sobic001G089600 Sobic008G051200--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic008G051200--Sobic004G030800 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic004G321700 Sobic004G321700 Sobic001G003500--Sobic004G321700 Sobic008G147200 Sobic008G147200 Sobic001G003500--Sobic008G147200 Sobic002G052700 Sobic002G052700 Sobic001G003500--Sobic002G052700 Sobic001G291800 Sobic001G291800 Sobic001G003500--Sobic001G291800 Sobic005G220000 Sobic005G220000 Sobic001G003500--Sobic005G220000 Sobic010G007100 Sobic010G007100 Sobic001G003500--Sobic010G007100 Sobic004G357400 Sobic004G357400 Sobic001G003500--Sobic004G357400 Sobic004G095300 Sobic004G095300 Sobic001G003500--Sobic004G095300 Sobic001G003500--Sobic006G125900 Sobic010G237900 Sobic010G237900 Sobic007G084100--Sobic010G237900 Sobic007G084100--Sobic005G160400 Sobic003G122500 Sobic003G122500 Sobic007G084100--Sobic003G122500 Sobic007G084100--Sobic001G473600 Sobic007G084100--Sobic001G114500 Sobic007G183900 Sobic007G183900 Sobic007G084100--Sobic007G183900 Sobic003G352200 Sobic003G352200 Sobic007G084100--Sobic003G352200 Sobic005G172500 Sobic005G172500 Sobic007G084100--Sobic005G172500 Sobic007G084100--Sobic004G185800 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic006G010000--Sobic001G114500 Sobic006G010000--Sobic001G259000 Sobic001G234200 Sobic001G234200 Sobic006G010000--Sobic001G234200 Sobic002G071000 Sobic002G071000 Sobic006G010000--Sobic002G071000 Sobic003G293300--Sobic001G251100 Sobic003G293300--Sobic006G010000 Sobic002G020700 Sobic002G020700 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic003G293300--Sobic002G071000 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic010G003400 Sobic010G003400 Sobic004G030800--Sobic010G003400 Sobic001G052400 Sobic001G052400 Sobic004G030800--Sobic001G052400 Sobic004G025800 Sobic004G025800 Sobic004G030800--Sobic004G025800 Sobic004G030800--Sobic008G051200 Sobic007G075800 Sobic007G075800 Sobic004G030800--Sobic007G075800 Sobic003G260400 Sobic003G260400 Sobic004G030800--Sobic003G260400 Sobic009G101200 Sobic009G101200 Sobic004G030800--Sobic009G101200 Sobic010G053600 Sobic010G053600 Sobic004G030800--Sobic010G053600 Sobic001G004400 Sobic001G004400 Sobic004G030800--Sobic001G004400 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.