Gene annotation
Transcriptome id Sobic.002G093900.1
Synonym DCP1, ATDCP1, Sb02g007770
Functional annotation mRNA-decapping enzyme, putative, expressed
UniProt C5X2N4
Pfam PF06058
Panther DB PTHR16290 PTHR16290:SF9
NCBI CDD KOG2868; Decapping enzyme complex component DCP1
KEGG Orthology K12611; mRNA-decapping enzyme 1B
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08370 : decapping 1
RAP-DB (Rice) LOC_Os07g14580.1 : mRNA-decapping enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a053924 , Zm00025a045529 , Zm00025a013617
Brachypodium KQK20244 , KQJ89397 , PNT65418 , KQK12264 , KQK12263
Barley HORVU4Hr1G021700.1 , HORVU5Hr1G040460.4 , HORVU5Hr1G040460.1 , HORVU5Hr1G040460.3 , HORVU4Hr1G021700.4 , HORVU4Hr1G021700.5 , HORVU4Hr1G021700.6 , HORVU4Hr1G021700.2 , HORVU4Hr1G021700.3
Wheat TraesCS5B02G125900 , TraesCS5B02G125900 , TraesCS5B02G125900 , TraesCS4B02G117300 , TraesCS4D02G115100 , TraesCS5D02G134200 , TraesCS5A02G126700 , TraesCS5A02G126700
Populus -


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cDNA sequences
Sobic.002G093900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
2 Sobic.001G428500 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
3 Sobic.003G121600 gb protein, putative, expressed -
4 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase
5 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
6 Sobic.003G192000 3-5 exonuclease/ nucleic acid binding protein, putative, expressed K18740: EXD1, exonuclease 3'-5' domain-containing protein 1
7 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
8 Sobic.001G050900 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
9 Sobic.007G140500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
10 Sobic.008G134900 translocon-associated protein beta domain containing protein, expressed K13250: translocon-associated protein subunit beta
11 Sobic.006G179600 RWP-RK domain-containing protein, putative, expressed -
12 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.010G253100 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
14 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
15 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase
16 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
17 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
18 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
19 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
20 Sobic.001G310700 protein kinase family protein, putative, expressed K14500: BR-signaling kinase


Gene co-expression network
sample Sobic002G093900 Sobic002G093900 Sobic001G458200 Sobic001G458200 Sobic002G093900--Sobic001G458200 Sobic001G428500 Sobic001G428500 Sobic002G093900--Sobic001G428500 Sobic003G121600 Sobic003G121600 Sobic002G093900--Sobic003G121600 Sobic008G162000 Sobic008G162000 Sobic002G093900--Sobic008G162000 Sobic009G070200 Sobic009G070200 Sobic002G093900--Sobic009G070200 Sobic003G192000 Sobic003G192000 Sobic002G093900--Sobic003G192000 Sobic003G416600 Sobic003G416600 Sobic002G093900--Sobic003G416600 Sobic001G050900 Sobic001G050900 Sobic002G093900--Sobic001G050900 Sobic007G140500 Sobic007G140500 Sobic002G093900--Sobic007G140500 Sobic001G458200--Sobic003G192000 Sobic003G128300 Sobic003G128300 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic002G359900 Sobic002G359900 Sobic001G458200--Sobic002G359900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic003G148900 Sobic003G148900 Sobic001G458200--Sobic003G148900 Sobic002G306600 Sobic002G306600 Sobic001G458200--Sobic002G306600 Sobic002G044000 Sobic002G044000 Sobic001G458200--Sobic002G044000 Sobic001G428500--Sobic002G093900 Sobic001G428500--Sobic001G050900 Sobic007G216500 Sobic007G216500 Sobic001G428500--Sobic007G216500 Sobic001G428500--Sobic001G458200 Sobic008G058700 Sobic008G058700 Sobic001G428500--Sobic008G058700 Sobic001G428500--Sobic003G192000 Sobic001G428500--Sobic008G162000 Sobic001G428500--Sobic007G140500 Sobic003G358200 Sobic003G358200 Sobic001G428500--Sobic003G358200 Sobic007G117800 Sobic007G117800 Sobic003G121600--Sobic007G117800 Sobic004G282100 Sobic004G282100 Sobic003G121600--Sobic004G282100 Sobic003G121600--Sobic003G148900 Sobic004G039300 Sobic004G039300 Sobic003G121600--Sobic004G039300 Sobic010G260400 Sobic010G260400 Sobic003G121600--Sobic010G260400 Sobic003G121600--Sobic002G093900 Sobic003G121600--Sobic008G134900 Sobic010G266300 Sobic010G266300 Sobic003G121600--Sobic010G266300 Sobic003G121600--Sobic009G070200 Sobic008G162000--Sobic002G044000 Sobic007G152400 Sobic007G152400 Sobic008G162000--Sobic007G152400 Sobic008G162000--Sobic009G070200 Sobic006G095200 Sobic006G095200 Sobic008G162000--Sobic006G095200 Sobic008G162000--Sobic004G282100 Sobic009G201800 Sobic009G201800 Sobic008G162000--Sobic009G201800 Sobic008G162000--Sobic001G458200 Sobic008G162000--Sobic002G093900 Sobic004G204800 Sobic004G204800 Sobic008G162000--Sobic004G204800 Sobic009G070200--Sobic010G266300 Sobic001G066700 Sobic001G066700 Sobic009G070200--Sobic001G066700 Sobic009G070200--Sobic002G044000 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic003G358300 Sobic003G358300 Sobic009G070200--Sobic003G358300 Sobic009G120100 Sobic009G120100 Sobic009G070200--Sobic009G120100 Sobic003G043400 Sobic003G043400 Sobic009G070200--Sobic003G043400 Sobic009G070200--Sobic007G152400 Sobic003G192000--Sobic001G458200 Sobic003G407900 Sobic003G407900 Sobic003G192000--Sobic003G407900 Sobic002G403200 Sobic002G403200 Sobic003G192000--Sobic002G403200 Sobic006G261100 Sobic006G261100 Sobic003G192000--Sobic006G261100 Sobic010G253100 Sobic010G253100 Sobic003G192000--Sobic010G253100 Sobic003G192000--Sobic002G359900 Sobic009G030400 Sobic009G030400 Sobic003G192000--Sobic009G030400 Sobic002G276900 Sobic002G276900 Sobic003G192000--Sobic002G276900 Sobic010G095700 Sobic010G095700 Sobic003G192000--Sobic010G095700 Sobic004G122000 Sobic004G122000 Sobic003G416600--Sobic004G122000 Sobic009G232800 Sobic009G232800 Sobic003G416600--Sobic009G232800 Sobic009G036900 Sobic009G036900 Sobic003G416600--Sobic009G036900 Sobic003G416600--Sobic002G276900 Sobic004G248800 Sobic004G248800 Sobic003G416600--Sobic004G248800 Sobic003G403400 Sobic003G403400 Sobic003G416600--Sobic003G403400 Sobic009G034400 Sobic009G034400 Sobic003G416600--Sobic009G034400 Sobic006G062800 Sobic006G062800 Sobic003G416600--Sobic006G062800 Sobic001G367000 Sobic001G367000 Sobic003G416600--Sobic001G367000 Sobic004G102900 Sobic004G102900 Sobic001G050900--Sobic004G102900 Sobic010G196800 Sobic010G196800 Sobic001G050900--Sobic010G196800 Sobic005G064200 Sobic005G064200 Sobic001G050900--Sobic005G064200 Sobic007G208200 Sobic007G208200 Sobic001G050900--Sobic007G208200 Sobic003G295000 Sobic003G295000 Sobic001G050900--Sobic003G295000 Sobic005G098700 Sobic005G098700 Sobic001G050900--Sobic005G098700 Sobic009G199300 Sobic009G199300 Sobic001G050900--Sobic009G199300 Sobic007G194100 Sobic007G194100 Sobic001G050900--Sobic007G194100 Sobic004G318400 Sobic004G318400 Sobic001G050900--Sobic004G318400 Sobic007G140500--Sobic005G098700 Sobic007G140500--Sobic004G318400 Sobic005G074400 Sobic005G074400 Sobic007G140500--Sobic005G074400 Sobic007G140500--Sobic004G102900 Sobic007G140500--Sobic005G064200 Sobic001G067000 Sobic001G067000 Sobic007G140500--Sobic001G067000 Sobic001G249200 Sobic001G249200 Sobic007G140500--Sobic001G249200 Sobic009G217300 Sobic009G217300 Sobic007G140500--Sobic009G217300 Sobic007G140500--Sobic002G093900
Octagon: transcription factors


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