Gene annotation
Transcriptome id Sobic.007G140500.1
Synonym Sb07g021610
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
CAF1 family ribonuclease containing protein, putative, expressed
UniProt C5YLK4
Pfam PF04857
Panther DB PTHR10797 PTHR10797:SF15
NCBI CDD KOG0304; mRNA deadenylase subunit
KEGG Orthology K12581; CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G80780 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os08g34170.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031173 , Zm00025a005853
Brachypodium -
Barley HORVU7Hr1G067520.3 , HORVU7Hr1G067520.2
Wheat -
Populus -


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cDNA sequences
Sobic.007G140500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G098700 glycosyl hydrolase, putative, expressed K01183: chitinase
2 Sobic.004G318400 MTD1, putative, expressed -
3 Sobic.005G074400 OsPDIL1-1 protein disulfide isomerase PDIL1-1, expressed K09580: PDIA1, protein disulfide-isomerase A1
4 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
5 Sobic.005G064200 eukaryotic aspartyl protease domain containing protein, expressed -
6 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
7 Sobic.001G249200 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
8 Sobic.009G217300 anaphase-promoting complex subunit 10, putative, expressed K03357: APC10, anaphase-promoting complex subunit 10
9 Sobic.002G093900 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
10 Sobic.009G057100 - -
11 Sobic.010G133150 - -
12 Sobic.003G430100 Phosphoesterase family protein(PubMedID : 24906815)@phosphoesterase family protein, putative, expressed K01114: phospholipase C
13 Sobic.006G081400 - -
14 Sobic.010G031400 early nodulin 93 ENOD93 protein, putative, expressed -
15 Sobic.006G077500 integral membrane protein DUF6 containing protein, expressed -
16 Sobic.002G161600 B3 DNA binding domain containing protein, expressed -
17 Sobic.002G097100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
18 Sobic.002G015500 OsFBD13 - F-box and FBD domain containing protein, expressed -
19 Sobic.005G147500 - -
20 Sobic.002G101500 OsFBX281 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic007G140500 Sobic007G140500 Sobic005G098700 Sobic005G098700 Sobic007G140500--Sobic005G098700 Sobic004G318400 Sobic004G318400 Sobic007G140500--Sobic004G318400 Sobic005G074400 Sobic005G074400 Sobic007G140500--Sobic005G074400 Sobic004G102900 Sobic004G102900 Sobic007G140500--Sobic004G102900 Sobic005G064200 Sobic005G064200 Sobic007G140500--Sobic005G064200 Sobic001G067000 Sobic001G067000 Sobic007G140500--Sobic001G067000 Sobic001G249200 Sobic001G249200 Sobic007G140500--Sobic001G249200 Sobic009G217300 Sobic009G217300 Sobic007G140500--Sobic009G217300 Sobic002G093900 Sobic002G093900 Sobic007G140500--Sobic002G093900 Sobic002G161600 Sobic002G161600 Sobic005G098700--Sobic002G161600 Sobic006G264800 Sobic006G264800 Sobic005G098700--Sobic006G264800 Sobic010G031400 Sobic010G031400 Sobic005G098700--Sobic010G031400 Sobic002G172100 Sobic002G172100 Sobic005G098700--Sobic002G172100 Sobic001G261700 Sobic001G261700 Sobic005G098700--Sobic001G261700 Sobic009G057100 Sobic009G057100 Sobic005G098700--Sobic009G057100 Sobic005G147500 Sobic005G147500 Sobic005G098700--Sobic005G147500 Sobic003G294800 Sobic003G294800 Sobic005G098700--Sobic003G294800 Sobic009G058300 Sobic009G058300 Sobic005G098700--Sobic009G058300 Sobic004G318400--Sobic004G102900 Sobic007G208200 Sobic007G208200 Sobic004G318400--Sobic007G208200 Sobic003G304500 Sobic003G304500 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic006G066600 Sobic006G066600 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic007G194100 Sobic007G194100 Sobic004G318400--Sobic007G194100 Sobic004G075700 Sobic004G075700 Sobic005G074400--Sobic004G075700 Sobic002G273000 Sobic002G273000 Sobic005G074400--Sobic002G273000 Sobic003G430100 Sobic003G430100 Sobic005G074400--Sobic003G430100 Sobic004G210000 Sobic004G210000 Sobic005G074400--Sobic004G210000 Sobic005G176875 Sobic005G176875 Sobic005G074400--Sobic005G176875 Sobic001G269650 Sobic001G269650 Sobic005G074400--Sobic001G269650 Sobic006G200901 Sobic006G200901 Sobic005G074400--Sobic006G200901 Sobic009G132650 Sobic009G132650 Sobic005G074400--Sobic009G132650 Sobic008G184500 Sobic008G184500 Sobic005G074400--Sobic008G184500 Sobic004G102900--Sobic004G318400 Sobic004G102900--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic004G102900--Sobic001G050900 Sobic001G154400 Sobic001G154400 Sobic004G102900--Sobic001G154400 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic004G102900--Sobic003G304500 Sobic004G102900--Sobic007G194100 Sobic002G113500 Sobic002G113500 Sobic004G102900--Sobic002G113500 Sobic007G018000 Sobic007G018000 Sobic005G064200--Sobic007G018000 Sobic003G324300 Sobic003G324300 Sobic005G064200--Sobic003G324300 Sobic005G064200--Sobic004G318400 Sobic005G064200--Sobic007G208200 Sobic005G064200--Sobic005G098700 Sobic005G064200--Sobic001G050900 Sobic009G199300 Sobic009G199300 Sobic005G064200--Sobic009G199300 Sobic005G064200--Sobic007G194100 Sobic010G196800 Sobic010G196800 Sobic005G064200--Sobic010G196800 Sobic003G026900 Sobic003G026900 Sobic001G067000--Sobic003G026900 Sobic006G143300 Sobic006G143300 Sobic001G067000--Sobic006G143300 Sobic002G420800 Sobic002G420800 Sobic001G067000--Sobic002G420800 Sobic002G230400 Sobic002G230400 Sobic001G067000--Sobic002G230400 Sobic007G076500 Sobic007G076500 Sobic001G067000--Sobic007G076500 Sobic002G147466 Sobic002G147466 Sobic001G067000--Sobic002G147466 Sobic001G067000--Sobic004G196800 Sobic007G199500 Sobic007G199500 Sobic001G067000--Sobic007G199500 Sobic010G193700 Sobic010G193700 Sobic001G067000--Sobic010G193700 Sobic005G071300 Sobic005G071300 Sobic001G249200--Sobic005G071300 Sobic001G249200--Sobic010G031400 Sobic001G297700 Sobic001G297700 Sobic001G249200--Sobic001G297700 Sobic005G185400 Sobic005G185400 Sobic001G249200--Sobic005G185400 Sobic001G249200--Sobic009G057100 Sobic010G035000 Sobic010G035000 Sobic001G249200--Sobic010G035000 Sobic005G184500 Sobic005G184500 Sobic001G249200--Sobic005G184500 Sobic006G105300 Sobic006G105300 Sobic001G249200--Sobic006G105300 Sobic002G300900 Sobic002G300900 Sobic001G249200--Sobic002G300900 Sobic009G217300--Sobic007G140500 Sobic009G217300--Sobic004G318400 Sobic009G217300--Sobic006G066600 Sobic002G403200 Sobic002G403200 Sobic009G217300--Sobic002G403200 Sobic006G179600 Sobic006G179600 Sobic009G217300--Sobic006G179600 Sobic003G159500 Sobic003G159500 Sobic009G217300--Sobic003G159500 Sobic009G217300--Sobic004G102900 Sobic009G217300--Sobic003G304500 Sobic009G217300--Sobic007G208200 Sobic001G458200 Sobic001G458200 Sobic002G093900--Sobic001G458200 Sobic001G428500 Sobic001G428500 Sobic002G093900--Sobic001G428500 Sobic003G121600 Sobic003G121600 Sobic002G093900--Sobic003G121600 Sobic008G162000 Sobic008G162000 Sobic002G093900--Sobic008G162000 Sobic009G070200 Sobic009G070200 Sobic002G093900--Sobic009G070200 Sobic003G192000 Sobic003G192000 Sobic002G093900--Sobic003G192000 Sobic003G416600 Sobic003G416600 Sobic002G093900--Sobic003G416600 Sobic002G093900--Sobic001G050900 Sobic002G093900--Sobic007G140500
Octagon: transcription factors


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