Gene annotation
Transcriptome id Sobic.009G217300.1
Synonym Sb09g027240, APC10
Functional annotation anaphase-promoting complex subunit 10, putative, expressed
UniProt C5YUX5
Pfam PF03256
Panther DB PTHR12936
NCBI CDD KOG3437; Anaphase-promoting complex (APC), subunit 10
KEGG Orthology K03357; APC10, anaphase-promoting complex subunit 10
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G18290 : anaphase promoting complex 10
RAP-DB (Rice) LOC_Os05g50360.1 : anaphase-promoting complex subunit 10, putative, expressed
MaizeGDB (Corn) Zm00025a036496 , Zm00025a044430
Brachypodium KQK04657
Barley HORVU1Hr1G091550.2 , HORVU1Hr1G091550.1
Wheat TraesCS6D02G354500 , TraesCS6D02G354500 , TraesCS1A02G419400 , TraesCS1D02G427200 , TraesCS1D02G427200 , TraesCS1B02G449500 , TraesCS6B02G407600
Populus -


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cDNA sequences
Sobic.009G217300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G140500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
2 Sobic.004G318400 MTD1, putative, expressed -
3 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
4 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
5 Sobic.006G179600 RWP-RK domain-containing protein, putative, expressed -
6 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
8 Sobic.003G304500 expressed protein -
9 Sobic.007G208200 expressed protein -
10 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase
11 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
12 Sobic.005G064200 eukaryotic aspartyl protease domain containing protein, expressed -
13 Sobic.010G037200 SAM dependent carboxyl methyltransferase, putative, expressed -
14 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G258600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
16 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
17 Sobic.004G237200 similar to Putative uncharacterized protein(PubMedID : 29862293)@HVA22, putative, expressed -
18 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
19 Sobic.001G154400 expp1 protein precursor, putative, expressed -
20 Sobic.009G025100 transporter, putative, expressed -


Gene co-expression network
sample Sobic009G217300 Sobic009G217300 Sobic007G140500 Sobic007G140500 Sobic009G217300--Sobic007G140500 Sobic004G318400 Sobic004G318400 Sobic009G217300--Sobic004G318400 Sobic006G066600 Sobic006G066600 Sobic009G217300--Sobic006G066600 Sobic002G403200 Sobic002G403200 Sobic009G217300--Sobic002G403200 Sobic006G179600 Sobic006G179600 Sobic009G217300--Sobic006G179600 Sobic003G159500 Sobic003G159500 Sobic009G217300--Sobic003G159500 Sobic004G102900 Sobic004G102900 Sobic009G217300--Sobic004G102900 Sobic003G304500 Sobic003G304500 Sobic009G217300--Sobic003G304500 Sobic007G208200 Sobic007G208200 Sobic009G217300--Sobic007G208200 Sobic005G098700 Sobic005G098700 Sobic007G140500--Sobic005G098700 Sobic007G140500--Sobic004G318400 Sobic005G074400 Sobic005G074400 Sobic007G140500--Sobic005G074400 Sobic007G140500--Sobic004G102900 Sobic005G064200 Sobic005G064200 Sobic007G140500--Sobic005G064200 Sobic001G067000 Sobic001G067000 Sobic007G140500--Sobic001G067000 Sobic001G249200 Sobic001G249200 Sobic007G140500--Sobic001G249200 Sobic007G140500--Sobic009G217300 Sobic002G093900 Sobic002G093900 Sobic007G140500--Sobic002G093900 Sobic004G318400--Sobic004G102900 Sobic004G318400--Sobic007G208200 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic007G194100 Sobic007G194100 Sobic004G318400--Sobic007G194100 Sobic006G066600--Sobic004G318400 Sobic004G067900 Sobic004G067900 Sobic006G066600--Sobic004G067900 Sobic006G066600--Sobic004G102900 Sobic006G244500 Sobic006G244500 Sobic006G066600--Sobic006G244500 Sobic007G018000 Sobic007G018000 Sobic006G066600--Sobic007G018000 Sobic004G028800 Sobic004G028800 Sobic006G066600--Sobic004G028800 Sobic001G488200 Sobic001G488200 Sobic006G066600--Sobic001G488200 Sobic006G066600--Sobic004G155300 Sobic002G308400 Sobic002G308400 Sobic006G066600--Sobic002G308400 Sobic003G192000 Sobic003G192000 Sobic002G403200--Sobic003G192000 Sobic010G207400 Sobic010G207400 Sobic002G403200--Sobic010G207400 Sobic002G359900 Sobic002G359900 Sobic002G403200--Sobic002G359900 Sobic004G272900 Sobic004G272900 Sobic002G403200--Sobic004G272900 Sobic001G033400 Sobic001G033400 Sobic002G403200--Sobic001G033400 Sobic008G160500 Sobic008G160500 Sobic002G403200--Sobic008G160500 Sobic002G403200--Sobic004G196800 Sobic009G030400 Sobic009G030400 Sobic002G403200--Sobic009G030400 Sobic005G032400 Sobic005G032400 Sobic002G403200--Sobic005G032400 Sobic006G179600--Sobic003G159500 Sobic006G061100 Sobic006G061100 Sobic006G179600--Sobic006G061100 Sobic006G179600--Sobic010G207400 Sobic001G341001 Sobic001G341001 Sobic006G179600--Sobic001G341001 Sobic010G227400 Sobic010G227400 Sobic006G179600--Sobic010G227400 Sobic006G015750 Sobic006G015750 Sobic006G179600--Sobic006G015750 Sobic003G091400 Sobic003G091400 Sobic006G179600--Sobic003G091400 Sobic002G409250 Sobic002G409250 Sobic006G179600--Sobic002G409250 Sobic002G078800 Sobic002G078800 Sobic006G179600--Sobic002G078800 Sobic003G159500--Sobic006G179600 Sobic003G159500--Sobic006G061100 Sobic003G159500--Sobic010G207400 Sobic009G132600 Sobic009G132600 Sobic003G159500--Sobic009G132600 Sobic010G071600 Sobic010G071600 Sobic003G159500--Sobic010G071600 Sobic010G273800 Sobic010G273800 Sobic003G159500--Sobic010G273800 Sobic007G042300 Sobic007G042300 Sobic003G159500--Sobic007G042300 Sobic003G159500--Sobic002G403200 Sobic003G159500--Sobic008G160500 Sobic004G102900--Sobic004G318400 Sobic004G102900--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic004G102900--Sobic001G050900 Sobic001G154400 Sobic001G154400 Sobic004G102900--Sobic001G154400 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic004G102900--Sobic003G304500 Sobic004G102900--Sobic007G194100 Sobic002G113500 Sobic002G113500 Sobic004G102900--Sobic002G113500 Sobic003G304500--Sobic009G025100 Sobic009G033500 Sobic009G033500 Sobic003G304500--Sobic009G033500 Sobic001G170500 Sobic001G170500 Sobic003G304500--Sobic001G170500 Sobic003G304500--Sobic004G274500 Sobic003G304500--Sobic004G196800 Sobic003G304500--Sobic004G155300 Sobic003G304500--Sobic004G318400 Sobic010G037200 Sobic010G037200 Sobic003G304500--Sobic010G037200 Sobic007G091200 Sobic007G091200 Sobic003G304500--Sobic007G091200 Sobic003G324300 Sobic003G324300 Sobic007G208200--Sobic003G324300 Sobic007G208200--Sobic004G318400 Sobic007G208200--Sobic004G102900 Sobic007G208200--Sobic007G194100 Sobic009G199300 Sobic009G199300 Sobic007G208200--Sobic009G199300 Sobic007G150700 Sobic007G150700 Sobic007G208200--Sobic007G150700 Sobic007G208200--Sobic003G304500 Sobic007G182500 Sobic007G182500 Sobic007G208200--Sobic007G182500 Sobic007G208200--Sobic005G064200
Octagon: transcription factors


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