Gene annotation
Transcriptome id Sobic.001G050900.2,Sobic.001G050900.1
Synonym Sb01g004670
Functional annotation oxidoreductase, putative, expressed
UniProt C5WX09
Pfam PF01549 PF03171
Panther DB PTHR10869 PTHR10869:SF65
NCBI CDD KOG1591; Prolyl 4-hydroxylase alpha subunit
KEGG Orthology K00472; prolyl 4-hydroxylase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G28480 : Oxoglutarate/iron-dependent oxygenase
RAP-DB (Rice) LOC_Os03g58890.2 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a016536
Brachypodium KQK12631
Barley -
Wheat TraesCS5B02G459100 , TraesCS5B02G459100
Populus -


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cDNA sequences
Sobic.001G050900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
2 Sobic.010G196800 OsFBX436 - F-box domain containing protein, expressed -
3 Sobic.005G064200 eukaryotic aspartyl protease domain containing protein, expressed -
4 Sobic.007G208200 expressed protein -
5 Sobic.003G295000 DUF584 domain containing protein, putative, expressed -
6 Sobic.005G098700 glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.009G199300 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
8 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
9 Sobic.004G318400 MTD1, putative, expressed -
10 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
11 Sobic.009G170800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
12 Sobic.003G324300 zinc finger C3HC4 type family protein, putative, expressed K10695: E3 ubiquitin-protein ligase RNF1/2
13 Sobic.002G093900 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
14 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
15 Sobic.009G031600 expressed protein -
16 Sobic.004G067900 expressed protein -
17 Sobic.001G428500 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
18 Sobic.002G113500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
19 Sobic.001G249200 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
20 Sobic.007G140500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8


Gene co-expression network
sample Sobic001G050900 Sobic001G050900 Sobic004G102900 Sobic004G102900 Sobic001G050900--Sobic004G102900 Sobic010G196800 Sobic010G196800 Sobic001G050900--Sobic010G196800 Sobic005G064200 Sobic005G064200 Sobic001G050900--Sobic005G064200 Sobic007G208200 Sobic007G208200 Sobic001G050900--Sobic007G208200 Sobic003G295000 Sobic003G295000 Sobic001G050900--Sobic003G295000 Sobic005G098700 Sobic005G098700 Sobic001G050900--Sobic005G098700 Sobic009G199300 Sobic009G199300 Sobic001G050900--Sobic009G199300 Sobic007G194100 Sobic007G194100 Sobic001G050900--Sobic007G194100 Sobic004G318400 Sobic004G318400 Sobic001G050900--Sobic004G318400 Sobic004G102900--Sobic004G318400 Sobic004G102900--Sobic007G208200 Sobic004G102900--Sobic001G050900 Sobic001G154400 Sobic001G154400 Sobic004G102900--Sobic001G154400 Sobic006G066600 Sobic006G066600 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic003G304500 Sobic003G304500 Sobic004G102900--Sobic003G304500 Sobic004G102900--Sobic007G194100 Sobic002G113500 Sobic002G113500 Sobic004G102900--Sobic002G113500 Sobic003G325700 Sobic003G325700 Sobic010G196800--Sobic003G325700 Sobic009G131400 Sobic009G131400 Sobic010G196800--Sobic009G131400 Sobic010G196800--Sobic001G050900 Sobic003G146400 Sobic003G146400 Sobic010G196800--Sobic003G146400 Sobic010G196800--Sobic005G064200 Sobic008G111500 Sobic008G111500 Sobic010G196800--Sobic008G111500 Sobic009G216800 Sobic009G216800 Sobic010G196800--Sobic009G216800 Sobic009G170800 Sobic009G170800 Sobic010G196800--Sobic009G170800 Sobic001G389900 Sobic001G389900 Sobic010G196800--Sobic001G389900 Sobic007G018000 Sobic007G018000 Sobic005G064200--Sobic007G018000 Sobic003G324300 Sobic003G324300 Sobic005G064200--Sobic003G324300 Sobic005G064200--Sobic004G318400 Sobic005G064200--Sobic007G208200 Sobic005G064200--Sobic005G098700 Sobic005G064200--Sobic001G050900 Sobic005G064200--Sobic009G199300 Sobic005G064200--Sobic007G194100 Sobic005G064200--Sobic010G196800 Sobic007G208200--Sobic003G324300 Sobic007G208200--Sobic004G318400 Sobic007G208200--Sobic004G102900 Sobic007G208200--Sobic007G194100 Sobic007G208200--Sobic009G199300 Sobic007G150700 Sobic007G150700 Sobic007G208200--Sobic007G150700 Sobic007G208200--Sobic003G304500 Sobic007G182500 Sobic007G182500 Sobic007G208200--Sobic007G182500 Sobic007G208200--Sobic005G064200 Sobic001G488000 Sobic001G488000 Sobic003G295000--Sobic001G488000 Sobic003G295000--Sobic009G199300 Sobic004G067900 Sobic004G067900 Sobic003G295000--Sobic004G067900 Sobic003G062200 Sobic003G062200 Sobic003G295000--Sobic003G062200 Sobic003G295000--Sobic001G050900 Sobic002G308400 Sobic002G308400 Sobic003G295000--Sobic002G308400 Sobic010G212000 Sobic010G212000 Sobic003G295000--Sobic010G212000 Sobic003G295000--Sobic007G194100 Sobic003G295000--Sobic010G196800 Sobic002G161600 Sobic002G161600 Sobic005G098700--Sobic002G161600 Sobic006G264800 Sobic006G264800 Sobic005G098700--Sobic006G264800 Sobic010G031400 Sobic010G031400 Sobic005G098700--Sobic010G031400 Sobic002G172100 Sobic002G172100 Sobic005G098700--Sobic002G172100 Sobic001G261700 Sobic001G261700 Sobic005G098700--Sobic001G261700 Sobic009G057100 Sobic009G057100 Sobic005G098700--Sobic009G057100 Sobic005G147500 Sobic005G147500 Sobic005G098700--Sobic005G147500 Sobic003G294800 Sobic003G294800 Sobic005G098700--Sobic003G294800 Sobic009G058300 Sobic009G058300 Sobic005G098700--Sobic009G058300 Sobic009G199300--Sobic007G194100 Sobic010G209300 Sobic010G209300 Sobic009G199300--Sobic010G209300 Sobic007G122932 Sobic007G122932 Sobic009G199300--Sobic007G122932 Sobic007G123000 Sobic007G123000 Sobic009G199300--Sobic007G123000 Sobic007G147300 Sobic007G147300 Sobic009G199300--Sobic007G147300 Sobic009G021300 Sobic009G021300 Sobic009G199300--Sobic009G021300 Sobic002G408700 Sobic002G408700 Sobic009G199300--Sobic002G408700 Sobic005G075000 Sobic005G075000 Sobic009G199300--Sobic005G075000 Sobic005G001500 Sobic005G001500 Sobic009G199300--Sobic005G001500 Sobic007G194100--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic007G194100--Sobic010G037200 Sobic007G194100--Sobic009G199300 Sobic007G194100--Sobic002G308400 Sobic007G194100--Sobic005G098700 Sobic009G025100 Sobic009G025100 Sobic007G194100--Sobic009G025100 Sobic007G194100--Sobic004G067900 Sobic007G194100--Sobic007G208200 Sobic001G442200 Sobic001G442200 Sobic007G194100--Sobic001G442200 Sobic004G318400--Sobic004G102900 Sobic004G318400--Sobic007G208200 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic004G318400--Sobic007G194100
Octagon: transcription factors


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