Gene annotation
Transcriptome id Sobic.005G036400.1
Synonym Sb05g003050
Functional annotation RING-H2 finger protein, putative, expressed
UniProt A0A1B6PQ06
Pfam PF13639
Panther DB PTHR14155:SF145 PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G20823 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os11g05300.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a013020
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
2 Sobic.004G349800 expressed protein -
3 Sobic.009G171700 SAG20, putative, expressed -
4 Sobic.008G180900 YIF1B, putative, expressed -
5 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
6 Sobic.007G059900 DUF292 domain containing protein, expressed -
7 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
8 Sobic.009G222800 expressed protein -
9 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
10 Sobic.001G078500 expressed protein -
11 Sobic.003G127400 BSD domain-containing protein, putative, expressed -
12 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
14 Sobic.005G036350 - -
15 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.002G035900 glycine-rich protein, putative, expressed K13344: peroxin-13
17 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
18 Sobic.001G094400 OsCML4 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
19 Sobic.002G421400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
20 Sobic.008G001800 SAG20, putative, expressed -


Gene co-expression network
sample Sobic005G036400 Sobic005G036400 Sobic002G352700 Sobic002G352700 Sobic005G036400--Sobic002G352700 Sobic004G349800 Sobic004G349800 Sobic005G036400--Sobic004G349800 Sobic009G171700 Sobic009G171700 Sobic005G036400--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic005G036400--Sobic008G180900 Sobic001G395400 Sobic001G395400 Sobic005G036400--Sobic001G395400 Sobic007G059900 Sobic007G059900 Sobic005G036400--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic005G036400--Sobic004G293700 Sobic009G222800 Sobic009G222800 Sobic005G036400--Sobic009G222800 Sobic010G168600 Sobic010G168600 Sobic005G036400--Sobic010G168600 Sobic002G352700--Sobic010G168600 Sobic010G253800 Sobic010G253800 Sobic002G352700--Sobic010G253800 Sobic001G057800 Sobic001G057800 Sobic002G352700--Sobic001G057800 Sobic002G256300 Sobic002G256300 Sobic002G352700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic002G352700--Sobic003G007500 Sobic004G203100 Sobic004G203100 Sobic002G352700--Sobic004G203100 Sobic010G083700 Sobic010G083700 Sobic002G352700--Sobic010G083700 Sobic009G246950 Sobic009G246950 Sobic002G352700--Sobic009G246950 Sobic002G352700--Sobic008G180900 Sobic004G320000 Sobic004G320000 Sobic004G349800--Sobic004G320000 Sobic004G349800--Sobic004G203100 Sobic003G146900 Sobic003G146900 Sobic004G349800--Sobic003G146900 Sobic004G349800--Sobic010G168600 Sobic001G124300 Sobic001G124300 Sobic004G349800--Sobic001G124300 Sobic004G349800--Sobic002G256300 Sobic004G349800--Sobic009G171700 Sobic001G512900 Sobic001G512900 Sobic004G349800--Sobic001G512900 Sobic004G349800--Sobic002G352700 Sobic001G078500 Sobic001G078500 Sobic009G171700--Sobic001G078500 Sobic009G171700--Sobic010G168600 Sobic009G171700--Sobic009G246950 Sobic009G171700--Sobic004G293700 Sobic009G171700--Sobic010G083700 Sobic009G171700--Sobic010G253800 Sobic009G171700--Sobic008G180900 Sobic007G186300 Sobic007G186300 Sobic009G171700--Sobic007G186300 Sobic009G171700--Sobic002G256300 Sobic008G180900--Sobic009G246950 Sobic008G180900--Sobic010G168600 Sobic008G180900--Sobic009G171700 Sobic009G193400 Sobic009G193400 Sobic008G180900--Sobic009G193400 Sobic008G180900--Sobic002G352700 Sobic001G478300 Sobic001G478300 Sobic008G180900--Sobic001G478300 Sobic008G180900--Sobic002G256300 Sobic008G180900--Sobic010G083700 Sobic008G180900--Sobic004G203100 Sobic007G166100 Sobic007G166100 Sobic001G395400--Sobic007G166100 Sobic002G400000 Sobic002G400000 Sobic001G395400--Sobic002G400000 Sobic006G263900 Sobic006G263900 Sobic001G395400--Sobic006G263900 Sobic003G416400 Sobic003G416400 Sobic001G395400--Sobic003G416400 Sobic001G395400--Sobic010G168600 Sobic003G077900 Sobic003G077900 Sobic001G395400--Sobic003G077900 Sobic010G000900 Sobic010G000900 Sobic001G395400--Sobic010G000900 Sobic001G395400--Sobic001G057800 Sobic009G165800 Sobic009G165800 Sobic001G395400--Sobic009G165800 Sobic003G220600 Sobic003G220600 Sobic007G059900--Sobic003G220600 Sobic006G062800 Sobic006G062800 Sobic007G059900--Sobic006G062800 Sobic010G204300 Sobic010G204300 Sobic007G059900--Sobic010G204300 Sobic007G059900--Sobic007G186300 Sobic002G261900 Sobic002G261900 Sobic007G059900--Sobic002G261900 Sobic008G161000 Sobic008G161000 Sobic007G059900--Sobic008G161000 Sobic007G059900--Sobic004G293700 Sobic002G296300 Sobic002G296300 Sobic007G059900--Sobic002G296300 Sobic009G152200 Sobic009G152200 Sobic007G059900--Sobic009G152200 Sobic004G293700--Sobic010G253800 Sobic004G079100 Sobic004G079100 Sobic004G293700--Sobic004G079100 Sobic004G293700--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic004G293700--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic004G293700--Sobic004G248800 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic006G141500 Sobic006G141500 Sobic004G293700--Sobic006G141500 Sobic004G293700--Sobic003G220600 Sobic009G222800--Sobic004G293700 Sobic005G228000 Sobic005G228000 Sobic009G222800--Sobic005G228000 Sobic001G037000 Sobic001G037000 Sobic009G222800--Sobic001G037000 Sobic010G012300 Sobic010G012300 Sobic009G222800--Sobic010G012300 Sobic009G222800--Sobic004G079100 Sobic009G222800--Sobic004G248800 Sobic001G422900 Sobic001G422900 Sobic009G222800--Sobic001G422900 Sobic002G282400 Sobic002G282400 Sobic009G222800--Sobic002G282400 Sobic003G181500 Sobic003G181500 Sobic009G222800--Sobic003G181500 Sobic010G168600--Sobic010G083700 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic004G104900 Sobic004G104900 Sobic010G168600--Sobic004G104900
Octagon: transcription factors


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