Gene annotation
Transcriptome id Sobic.001G222200.3,Sobic.001G222200.1,Sobic.001G222200.4,Sobic.001G222200.2
Synonym Sb01g019540
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
endo-beta-N-acetylglucosaminidase, putative, expressed
UniProt A0A1B6QKA6 , A0A1Z5S771 , A0A1B6QKA0
Pfam PF05903
Panther DB PTHR12378 PTHR12378:SF16
NCBI CDD KOG0324; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07090 : PPPDE putative thiol peptidase family protein
RAP-DB (Rice) LOC_Os10g33350.1 : endo-beta-N-acetylglucosaminidase, putative, expressed
MaizeGDB (Corn) Zm00025a017645
Brachypodium KQK01312
Barley HORVU1Hr1G040160.16 , HORVU1Hr1G040160.17 , HORVU1Hr1G040160.14 , HORVU1Hr1G040160.15 , HORVU1Hr1G040160.12 , HORVU1Hr1G040160.13 , HORVU1Hr1G040160.10 , HORVU1Hr1G040160.18 , HORVU1Hr1G040160.19 , HORVU1Hr1G040180.2 , HORVU1Hr1G040180.3 , HORVU1Hr1G040180.1 , HORVU1Hr1G040160.4 , HORVU1Hr1G040160.5 , HORVU1Hr1G040160.6 , HORVU1Hr1G040160.7 , HORVU1Hr1G040160.2 , HORVU1Hr1G040160.3 , HORVU1Hr1G040160.8 , HORVU1Hr1G040160.9 , HORVU1Hr1G040160.25 , HORVU1Hr1G040160.24 , HORVU1Hr1G040160.23 , HORVU1Hr1G040160.22 , HORVU1Hr1G040160.21 , HORVU1Hr1G040160.20
Wheat TraesCS6A02G384300
Populus -


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cDNA sequences
Sobic.001G222200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pollen ankyrin, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
2 Sobic.002G217400 HD domain containing protein, putative, expressed -
3 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
4 Sobic.004G337200 dehydrogenase, putative, expressed -
5 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G436300 expressed protein -
7 Sobic.004G265800 uridine kinase, putative, expressed -
8 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
9 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
10 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
11 Sobic.003G105101 - K13628: iron-sulfur cluster assembly protein
12 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
13 Sobic.003G141000 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
14 Sobic.001G034300 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.005G203800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lipase precursor, putative, expressed -
16 Sobic.003G299000 protein of unknown function DUF1421 domain containing protein, expressed -
17 Sobic.006G125400 steroid nuclear receptor, ligand-binding, putative, expressed -
18 Sobic.010G196500 zinc-binding protein, putative, expressed -
19 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
20 Sobic.008G090600 expressed protein -


Gene co-expression network
sample Sobic001G222200 Sobic001G222200 Sobic010G018100 Sobic010G018100 Sobic001G222200--Sobic010G018100 Sobic002G217400 Sobic002G217400 Sobic001G222200--Sobic002G217400 Sobic003G416400 Sobic003G416400 Sobic001G222200--Sobic003G416400 Sobic004G337200 Sobic004G337200 Sobic001G222200--Sobic004G337200 Sobic010G043400 Sobic010G043400 Sobic001G222200--Sobic010G043400 Sobic003G436300 Sobic003G436300 Sobic001G222200--Sobic003G436300 Sobic004G265800 Sobic004G265800 Sobic001G222200--Sobic004G265800 Sobic003G403500 Sobic003G403500 Sobic001G222200--Sobic003G403500 Sobic002G274800 Sobic002G274800 Sobic001G222200--Sobic002G274800 Sobic010G018100--Sobic010G043400 Sobic010G018100--Sobic001G222200 Sobic010G018100--Sobic002G274800 Sobic004G124200 Sobic004G124200 Sobic010G018100--Sobic004G124200 Sobic001G320200 Sobic001G320200 Sobic010G018100--Sobic001G320200 Sobic003G363100 Sobic003G363100 Sobic010G018100--Sobic003G363100 Sobic008G189200 Sobic008G189200 Sobic010G018100--Sobic008G189200 Sobic003G388251 Sobic003G388251 Sobic010G018100--Sobic003G388251 Sobic002G215800 Sobic002G215800 Sobic010G018100--Sobic002G215800 Sobic001G414500 Sobic001G414500 Sobic002G217400--Sobic001G414500 Sobic004G102400 Sobic004G102400 Sobic002G217400--Sobic004G102400 Sobic003G352600 Sobic003G352600 Sobic002G217400--Sobic003G352600 Sobic005G203800 Sobic005G203800 Sobic002G217400--Sobic005G203800 Sobic001G350900 Sobic001G350900 Sobic002G217400--Sobic001G350900 Sobic003G098000 Sobic003G098000 Sobic002G217400--Sobic003G098000 Sobic009G138100 Sobic009G138100 Sobic002G217400--Sobic009G138100 Sobic002G375300 Sobic002G375300 Sobic002G217400--Sobic002G375300 Sobic010G130200 Sobic010G130200 Sobic002G217400--Sobic010G130200 Sobic001G395400 Sobic001G395400 Sobic003G416400--Sobic001G395400 Sobic002G105200 Sobic002G105200 Sobic003G416400--Sobic002G105200 Sobic003G416400--Sobic002G375300 Sobic001G057800 Sobic001G057800 Sobic003G416400--Sobic001G057800 Sobic003G077900 Sobic003G077900 Sobic003G416400--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic003G416400--Sobic002G400000 Sobic003G201900 Sobic003G201900 Sobic003G416400--Sobic003G201900 Sobic002G385900 Sobic002G385900 Sobic003G416400--Sobic002G385900 Sobic001G323000 Sobic001G323000 Sobic003G416400--Sobic001G323000 Sobic001G270400 Sobic001G270400 Sobic004G337200--Sobic001G270400 Sobic003G116900 Sobic003G116900 Sobic004G337200--Sobic003G116900 Sobic001G121200 Sobic001G121200 Sobic004G337200--Sobic001G121200 Sobic001G296900 Sobic001G296900 Sobic004G337200--Sobic001G296900 Sobic004G266400 Sobic004G266400 Sobic004G337200--Sobic004G266400 Sobic002G364800 Sobic002G364800 Sobic004G337200--Sobic002G364800 Sobic006G160300 Sobic006G160300 Sobic004G337200--Sobic006G160300 Sobic004G337200--Sobic005G203800 Sobic006G034000 Sobic006G034000 Sobic004G337200--Sobic006G034000 Sobic009G126900 Sobic009G126900 Sobic010G043400--Sobic009G126900 Sobic010G043400--Sobic004G124200 Sobic002G009700 Sobic002G009700 Sobic010G043400--Sobic002G009700 Sobic010G043400--Sobic010G018100 Sobic003G355600 Sobic003G355600 Sobic010G043400--Sobic003G355600 Sobic006G271200 Sobic006G271200 Sobic010G043400--Sobic006G271200 Sobic010G107000 Sobic010G107000 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic003G436300--Sobic006G034000 Sobic001G085100 Sobic001G085100 Sobic003G436300--Sobic001G085100 Sobic010G020300 Sobic010G020300 Sobic003G436300--Sobic010G020300 Sobic003G436300--Sobic001G057800 Sobic003G436300--Sobic003G116900 Sobic003G312200 Sobic003G312200 Sobic003G436300--Sobic003G312200 Sobic003G436300--Sobic001G323000 Sobic004G348900 Sobic004G348900 Sobic003G436300--Sobic004G348900 Sobic003G436300--Sobic001G296900 Sobic004G131040 Sobic004G131040 Sobic004G265800--Sobic004G131040 Sobic001G462500 Sobic001G462500 Sobic004G265800--Sobic001G462500 Sobic007G004500 Sobic007G004500 Sobic004G265800--Sobic007G004500 Sobic003G200100 Sobic003G200100 Sobic004G265800--Sobic003G200100 Sobic004G065000 Sobic004G065000 Sobic004G265800--Sobic004G065000 Sobic001G351800 Sobic001G351800 Sobic004G265800--Sobic001G351800 Sobic003G322700 Sobic003G322700 Sobic004G265800--Sobic003G322700 Sobic004G265800--Sobic006G204900 Sobic002G266000 Sobic002G266000 Sobic004G265800--Sobic002G266000 Sobic002G001000 Sobic002G001000 Sobic003G403500--Sobic002G001000 Sobic001G500800 Sobic001G500800 Sobic003G403500--Sobic001G500800 Sobic003G375900 Sobic003G375900 Sobic003G403500--Sobic003G375900 Sobic002G367100 Sobic002G367100 Sobic003G403500--Sobic002G367100 Sobic003G002600 Sobic003G002600 Sobic003G403500--Sobic003G002600 Sobic004G201700 Sobic004G201700 Sobic003G403500--Sobic004G201700 Sobic004G131900 Sobic004G131900 Sobic003G403500--Sobic004G131900 Sobic002G200700 Sobic002G200700 Sobic003G403500--Sobic002G200700 Sobic004G340800 Sobic004G340800 Sobic003G403500--Sobic004G340800 Sobic002G274800--Sobic010G043400 Sobic007G225900 Sobic007G225900 Sobic002G274800--Sobic007G225900 Sobic003G252300 Sobic003G252300 Sobic002G274800--Sobic003G252300 Sobic003G105800 Sobic003G105800 Sobic002G274800--Sobic003G105800 Sobic002G249200 Sobic002G249200 Sobic002G274800--Sobic002G249200 Sobic002G274800--Sobic008G189200 Sobic009G161000 Sobic009G161000 Sobic002G274800--Sobic009G161000 Sobic002G274800--Sobic004G124200 Sobic001G282600 Sobic001G282600 Sobic002G274800--Sobic001G282600
Octagon: transcription factors


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