Gene annotation
Transcriptome id Sobic.004G028000.1
Synonym Sb04g002460, PRA1.H
Functional annotation expressed protein
UniProt C5XTS9
Pfam PF03208
Panther DB PTHR19317 PTHR19317:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27540 : prenylated RAB acceptor 1.H
RAP-DB (Rice) LOC_Os09g04880.2 : expressed protein
MaizeGDB (Corn) Zm00025a018838 , Zm00025a034991
Brachypodium KQJ86979 , PNT62842 , PNT62843 , PNT62840 , PNT62841 , KQJ86981 , KQJ86983 , KQJ86982 , PNT62839 , KQJ86980
Barley -
Wheat TraesCS5B02G162900 , TraesCS5B02G162900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
2 Sobic.005G055000 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
3 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
4 Sobic.003G325500 ICE-like protease p20 domain containing protein, putative, expressed -
5 Sobic.007G117500 stromal cell-derived factor 2-like protein precursor, putative, expressed -
6 Sobic.004G202700 expressed protein K10268: F-box and leucine-rich repeat protein 2/20
7 Sobic.003G299000 protein of unknown function DUF1421 domain containing protein, expressed -
8 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
9 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
10 Sobic.008G118600 riboflavin synthase alpha chain, putative, expressed K00793: ribE, riboflavin synthase
11 Sobic.006G280600 tubulin folding cofactor B, putative, expressed K17262: TBCB, CKAP1, tubulin-specific chaperone B
12 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
13 Sobic.001G364600 transmembrane protein 85, putative, expressed -
14 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
15 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
16 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
17 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
18 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
19 Sobic.005G072200 lipase, putative, expressed -
20 Sobic.001G004700 expressed protein -


Gene co-expression network
sample Sobic004G028000 Sobic004G028000 Sobic004G060600 Sobic004G060600 Sobic004G028000--Sobic004G060600 Sobic005G055000 Sobic005G055000 Sobic004G028000--Sobic005G055000 Sobic001G417900 Sobic001G417900 Sobic004G028000--Sobic001G417900 Sobic003G325500 Sobic003G325500 Sobic004G028000--Sobic003G325500 Sobic007G117500 Sobic007G117500 Sobic004G028000--Sobic007G117500 Sobic004G202700 Sobic004G202700 Sobic004G028000--Sobic004G202700 Sobic003G299000 Sobic003G299000 Sobic004G028000--Sobic003G299000 Sobic003G369500 Sobic003G369500 Sobic004G028000--Sobic003G369500 Sobic001G263000 Sobic001G263000 Sobic004G028000--Sobic001G263000 Sobic003G077900 Sobic003G077900 Sobic004G060600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic001G428100 Sobic001G428100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic008G051900 Sobic008G051900 Sobic005G055000--Sobic008G051900 Sobic006G237200 Sobic006G237200 Sobic005G055000--Sobic006G237200 Sobic005G055000--Sobic004G028000 Sobic003G216500 Sobic003G216500 Sobic005G055000--Sobic003G216500 Sobic002G410700 Sobic002G410700 Sobic005G055000--Sobic002G410700 Sobic005G055000--Sobic003G325500 Sobic009G207100 Sobic009G207100 Sobic005G055000--Sobic009G207100 Sobic009G168000 Sobic009G168000 Sobic005G055000--Sobic009G168000 Sobic001G526100 Sobic001G526100 Sobic005G055000--Sobic001G526100 Sobic001G417900--Sobic003G077900 Sobic002G431600 Sobic002G431600 Sobic001G417900--Sobic002G431600 Sobic003G122500 Sobic003G122500 Sobic001G417900--Sobic003G122500 Sobic010G277100 Sobic010G277100 Sobic001G417900--Sobic010G277100 Sobic002G071000 Sobic002G071000 Sobic001G417900--Sobic002G071000 Sobic001G417900--Sobic003G299000 Sobic001G049500 Sobic001G049500 Sobic001G417900--Sobic001G049500 Sobic001G427500 Sobic001G427500 Sobic001G417900--Sobic001G427500 Sobic001G414500 Sobic001G414500 Sobic001G417900--Sobic001G414500 Sobic001G428200 Sobic001G428200 Sobic003G325500--Sobic001G428200 Sobic003G003000 Sobic003G003000 Sobic003G325500--Sobic003G003000 Sobic006G206700 Sobic006G206700 Sobic003G325500--Sobic006G206700 Sobic001G087900 Sobic001G087900 Sobic003G325500--Sobic001G087900 Sobic003G325500--Sobic004G028000 Sobic003G417000 Sobic003G417000 Sobic003G325500--Sobic003G417000 Sobic003G325500--Sobic003G369500 Sobic003G325500--Sobic005G055000 Sobic006G281200 Sobic006G281200 Sobic003G325500--Sobic006G281200 Sobic006G244700 Sobic006G244700 Sobic007G117500--Sobic006G244700 Sobic002G209400 Sobic002G209400 Sobic007G117500--Sobic002G209400 Sobic006G281500 Sobic006G281500 Sobic007G117500--Sobic006G281500 Sobic007G117500--Sobic001G263000 Sobic007G117500--Sobic004G028000 Sobic008G088830 Sobic008G088830 Sobic007G117500--Sobic008G088830 Sobic004G124100 Sobic004G124100 Sobic007G117500--Sobic004G124100 Sobic001G048200 Sobic001G048200 Sobic007G117500--Sobic001G048200 Sobic001G067300 Sobic001G067300 Sobic007G117500--Sobic001G067300 Sobic005G064800 Sobic005G064800 Sobic004G202700--Sobic005G064800 Sobic002G339500 Sobic002G339500 Sobic004G202700--Sobic002G339500 Sobic002G281800 Sobic002G281800 Sobic004G202700--Sobic002G281800 Sobic004G202700--Sobic004G028000 Sobic007G029100 Sobic007G029100 Sobic004G202700--Sobic007G029100 Sobic004G202700--Sobic001G427500 Sobic010G265800 Sobic010G265800 Sobic004G202700--Sobic010G265800 Sobic006G004600 Sobic006G004600 Sobic004G202700--Sobic006G004600 Sobic001G004700 Sobic001G004700 Sobic004G202700--Sobic001G004700 Sobic003G299000--Sobic003G077900 Sobic004G348900 Sobic004G348900 Sobic003G299000--Sobic004G348900 Sobic001G206900 Sobic001G206900 Sobic003G299000--Sobic001G206900 Sobic003G436300 Sobic003G436300 Sobic003G299000--Sobic003G436300 Sobic004G227300 Sobic004G227300 Sobic003G299000--Sobic004G227300 Sobic003G299000--Sobic001G417900 Sobic002G418700 Sobic002G418700 Sobic003G299000--Sobic002G418700 Sobic003G217400 Sobic003G217400 Sobic003G299000--Sobic003G217400 Sobic002G242200 Sobic002G242200 Sobic003G299000--Sobic002G242200 Sobic003G369500--Sobic004G060600 Sobic003G369500--Sobic003G077900 Sobic003G369500--Sobic009G131100 Sobic003G369500--Sobic001G428200 Sobic007G091000 Sobic007G091000 Sobic003G369500--Sobic007G091000 Sobic003G369500--Sobic001G428100 Sobic007G044300 Sobic007G044300 Sobic003G369500--Sobic007G044300 Sobic010G267500 Sobic010G267500 Sobic003G369500--Sobic010G267500 Sobic003G277000 Sobic003G277000 Sobic003G369500--Sobic003G277000 Sobic009G004600 Sobic009G004600 Sobic001G263000--Sobic009G004600 Sobic001G263000--Sobic006G244700 Sobic009G033900 Sobic009G033900 Sobic001G263000--Sobic009G033900 Sobic001G263000--Sobic002G209400 Sobic002G268400 Sobic002G268400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic004G074300 Sobic004G074300 Sobic001G263000--Sobic004G074300 Sobic004G356900 Sobic004G356900 Sobic001G263000--Sobic004G356900 Sobic010G057900 Sobic010G057900 Sobic001G263000--Sobic010G057900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.