Gene annotation
Transcriptome id Sobic.004G202700.2
Synonym Sb04g024900
Functional annotation expressed protein
UniProt A0A194YQT1
Pfam PF00646
Panther DB PTHR24006 PTHR24006:SF433
NCBI CDD -
KEGG Orthology K10268; F-box and leucine-rich repeat protein 2/20
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G40470 : RNI-like superfamily protein
RAP-DB (Rice) ChrSy.fgenesh.mRNA.74 : expressed protein
MaizeGDB (Corn) Zm00025a021300 , Zm00025a019561
Brachypodium -
Barley HORVU6Hr1G038430.2 , HORVU6Hr1G038430.3 , HORVU6Hr1G038430.1
Wheat TraesCS6A02G181900 , TraesCS6B02G210700
Populus -


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cDNA sequences
Sobic.004G202700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G064800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
2 Sobic.002G339500 diacylglycerol kinase, putative, expressed K04718: sphingosine kinase
3 Sobic.002G281800 expressed protein -
4 Sobic.004G028000 expressed protein -
5 Sobic.007G029100 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
6 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
7 Sobic.010G265800 tyrosine protein kinase domain containing protein, putative, expressed -
8 Sobic.006G004600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
9 Sobic.001G004700 expressed protein -
10 Sobic.003G237000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed -
11 Sobic.006G255000 TLD family protein, putative, expressed -
12 Sobic.007G171950 - -
13 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
14 Sobic.002G133100 prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
15 Sobic.009G207100 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
16 Sobic.005G203800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lipase precursor, putative, expressed -
17 Sobic.010G123400 GRAM and C2 domains containing protein, putative, expressed -
18 Sobic.002G207400 auxin-induced protein 5NG4, putative, expressed -
19 Sobic.001G067300 histidinol dehydrogenase, chloroplast precursor, putative, expressed K00013: histidinol dehydrogenase
20 Sobic.006G238700 C2 domain containing protein, expressed -


Gene co-expression network
sample Sobic004G202700 Sobic004G202700 Sobic005G064800 Sobic005G064800 Sobic004G202700--Sobic005G064800 Sobic002G339500 Sobic002G339500 Sobic004G202700--Sobic002G339500 Sobic002G281800 Sobic002G281800 Sobic004G202700--Sobic002G281800 Sobic004G028000 Sobic004G028000 Sobic004G202700--Sobic004G028000 Sobic007G029100 Sobic007G029100 Sobic004G202700--Sobic007G029100 Sobic001G427500 Sobic001G427500 Sobic004G202700--Sobic001G427500 Sobic010G265800 Sobic010G265800 Sobic004G202700--Sobic010G265800 Sobic006G004600 Sobic006G004600 Sobic004G202700--Sobic006G004600 Sobic001G004700 Sobic001G004700 Sobic004G202700--Sobic001G004700 Sobic005G064800--Sobic004G202700 Sobic007G073700 Sobic007G073700 Sobic005G064800--Sobic007G073700 Sobic005G064800--Sobic007G029100 Sobic009G190800 Sobic009G190800 Sobic005G064800--Sobic009G190800 Sobic004G174100 Sobic004G174100 Sobic005G064800--Sobic004G174100 Sobic004G142800 Sobic004G142800 Sobic005G064800--Sobic004G142800 Sobic001G416300 Sobic001G416300 Sobic005G064800--Sobic001G416300 Sobic006G242000 Sobic006G242000 Sobic005G064800--Sobic006G242000 Sobic005G064800--Sobic002G339500 Sobic002G339500--Sobic001G427500 Sobic001G120300 Sobic001G120300 Sobic002G339500--Sobic001G120300 Sobic002G092300 Sobic002G092300 Sobic002G339500--Sobic002G092300 Sobic002G193400 Sobic002G193400 Sobic002G339500--Sobic002G193400 Sobic001G057200 Sobic001G057200 Sobic002G339500--Sobic001G057200 Sobic002G339500--Sobic004G202700 Sobic010G123400 Sobic010G123400 Sobic002G339500--Sobic010G123400 Sobic006G244700 Sobic006G244700 Sobic002G339500--Sobic006G244700 Sobic010G084000 Sobic010G084000 Sobic002G339500--Sobic010G084000 Sobic010G080300 Sobic010G080300 Sobic002G281800--Sobic010G080300 Sobic003G291400 Sobic003G291400 Sobic002G281800--Sobic003G291400 Sobic008G072700 Sobic008G072700 Sobic002G281800--Sobic008G072700 Sobic007G046500 Sobic007G046500 Sobic002G281800--Sobic007G046500 Sobic002G281800--Sobic007G029100 Sobic002G281800--Sobic009G190800 Sobic003G310100 Sobic003G310100 Sobic002G281800--Sobic003G310100 Sobic004G152100 Sobic004G152100 Sobic002G281800--Sobic004G152100 Sobic009G029700 Sobic009G029700 Sobic002G281800--Sobic009G029700 Sobic004G060600 Sobic004G060600 Sobic004G028000--Sobic004G060600 Sobic005G055000 Sobic005G055000 Sobic004G028000--Sobic005G055000 Sobic001G417900 Sobic001G417900 Sobic004G028000--Sobic001G417900 Sobic003G325500 Sobic003G325500 Sobic004G028000--Sobic003G325500 Sobic007G117500 Sobic007G117500 Sobic004G028000--Sobic007G117500 Sobic004G028000--Sobic004G202700 Sobic003G299000 Sobic003G299000 Sobic004G028000--Sobic003G299000 Sobic003G369500 Sobic003G369500 Sobic004G028000--Sobic003G369500 Sobic001G263000 Sobic001G263000 Sobic004G028000--Sobic001G263000 Sobic002G404200 Sobic002G404200 Sobic007G029100--Sobic002G404200 Sobic007G029100--Sobic009G029700 Sobic001G380500 Sobic001G380500 Sobic007G029100--Sobic001G380500 Sobic010G113000 Sobic010G113000 Sobic007G029100--Sobic010G113000 Sobic007G029100--Sobic010G080300 Sobic001G341800 Sobic001G341800 Sobic007G029100--Sobic001G341800 Sobic007G029100--Sobic002G281800 Sobic007G029100--Sobic007G073700 Sobic007G029100--Sobic005G064800 Sobic001G427500--Sobic002G339500 Sobic001G427500--Sobic002G193400 Sobic004G227300 Sobic004G227300 Sobic001G427500--Sobic004G227300 Sobic001G427500--Sobic006G004600 Sobic007G062500 Sobic007G062500 Sobic001G427500--Sobic007G062500 Sobic001G427500--Sobic001G417900 Sobic009G017400 Sobic009G017400 Sobic001G427500--Sobic009G017400 Sobic001G261597 Sobic001G261597 Sobic001G427500--Sobic001G261597 Sobic001G022600 Sobic001G022600 Sobic001G427500--Sobic001G022600 Sobic010G265800--Sobic006G004600 Sobic003G413500 Sobic003G413500 Sobic010G265800--Sobic003G413500 Sobic003G314500 Sobic003G314500 Sobic010G265800--Sobic003G314500 Sobic003G308700 Sobic003G308700 Sobic010G265800--Sobic003G308700 Sobic009G148900 Sobic009G148900 Sobic010G265800--Sobic009G148900 Sobic001G387600 Sobic001G387600 Sobic010G265800--Sobic001G387600 Sobic009G057700 Sobic009G057700 Sobic010G265800--Sobic009G057700 Sobic010G265800--Sobic001G427500 Sobic010G245100 Sobic010G245100 Sobic010G265800--Sobic010G245100 Sobic006G004600--Sobic001G427500 Sobic006G004600--Sobic010G265800 Sobic007G007000 Sobic007G007000 Sobic006G004600--Sobic007G007000 Sobic002G251700 Sobic002G251700 Sobic006G004600--Sobic002G251700 Sobic006G004600--Sobic003G314500 Sobic006G269000 Sobic006G269000 Sobic006G004600--Sobic006G269000 Sobic006G004600--Sobic001G004700 Sobic006G004600--Sobic001G387600 Sobic004G210900 Sobic004G210900 Sobic006G004600--Sobic004G210900 Sobic002G122600 Sobic002G122600 Sobic001G004700--Sobic002G122600 Sobic003G078800 Sobic003G078800 Sobic001G004700--Sobic003G078800 Sobic001G004700--Sobic004G227300 Sobic006G171700 Sobic006G171700 Sobic001G004700--Sobic006G171700 Sobic001G004700--Sobic001G380500 Sobic001G004700--Sobic003G299000 Sobic006G119800 Sobic006G119800 Sobic001G004700--Sobic006G119800 Sobic001G004700--Sobic006G004600 Sobic007G171950 Sobic007G171950 Sobic001G004700--Sobic007G171950
Octagon: transcription factors


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