Gene annotation
Transcriptome id Sobic.006G004600.2,Sobic.006G004600.4,Sobic.006G004600.6,Sobic.006G004600.3,Sobic.006G004600.5
Synonym Sb06g000590
Functional annotation erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt A0A1Z5RC82 , C5YBK7
Pfam PF03446 PF00389
Panther DB PTHR10996 PTHR10996:SF131
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology K15919; glyoxylate/hydroxypyruvate reductase
Gene Ontology GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G12550 : D-isomer specific 2-hydroxyacid dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g01600.1,LOC_Os04g01600.2,LOC_Os04g01650.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055475
Brachypodium KQJ81655 , KQJ81659 , PNT60611 , KQJ81661 , KQJ81662
Barley HORVU2Hr1G005140.1 , HORVU4Hr1G086940.1 , HORVU4Hr1G086940.3 , HORVU4Hr1G086940.2 , HORVU4Hr1G086940.5 , HORVU4Hr1G086940.4 , HORVU4Hr1G086940.6 , HORVU2Hr1G005140.17 , HORVU2Hr1G005230.1 , HORVU2Hr1G005230.2 , HORVU2Hr1G005230.3 , HORVU2Hr1G005140.20 , HORVU2Hr1G005210.2 , HORVU2Hr1G005210.3
Wheat TraesCS2A02G035400 , TraesCS2D02G034600 , TraesCS2A02G035500 , TraesCS2D02G034700 , TraesCS2B02G048500 , TraesCS2B02G048100
Populus -


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cDNA sequences
Sobic.006G004600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
2 Sobic.010G265800 tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.007G007000 DUF250 domain containing protein, putative, expressed K15356: VRG4, GDP-mannose transporter
4 Sobic.002G251700 no apical meristem protein, putative, expressed -
5 Sobic.003G314500 expressed protein -
6 Sobic.006G269000 protein kinase, putative, expressed -
7 Sobic.001G004700 expressed protein -
8 Sobic.001G387600 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
9 Sobic.004G210900 auxin efflux carrier component, putative, expressed -
10 Sobic.003G103200 pex14, putative, expressed K13343: peroxin-14
11 Sobic.007G110200 wound responsive protein, putative, expressed -
12 Sobic.009G099500 expressed protein -
13 Sobic.008G146900 "similar to Leucine Rich Repeat family protein, expressed"(PubMedID : 29862293)@disease resistance protein, putative, expressed -
14 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
15 Sobic.003G344900 selT-like protein precursor, putative, expressed -
16 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
17 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
18 Sobic.003G217400 zinc finger, C3HC4 type family protein, expressed -
19 Sobic.006G119800 leucine rich repeat containing protein, expressed -
20 Sobic.004G202700 expressed protein K10268: F-box and leucine-rich repeat protein 2/20


Gene co-expression network
sample Sobic006G004600 Sobic006G004600 Sobic001G427500 Sobic001G427500 Sobic006G004600--Sobic001G427500 Sobic010G265800 Sobic010G265800 Sobic006G004600--Sobic010G265800 Sobic007G007000 Sobic007G007000 Sobic006G004600--Sobic007G007000 Sobic002G251700 Sobic002G251700 Sobic006G004600--Sobic002G251700 Sobic003G314500 Sobic003G314500 Sobic006G004600--Sobic003G314500 Sobic006G269000 Sobic006G269000 Sobic006G004600--Sobic006G269000 Sobic001G004700 Sobic001G004700 Sobic006G004600--Sobic001G004700 Sobic001G387600 Sobic001G387600 Sobic006G004600--Sobic001G387600 Sobic004G210900 Sobic004G210900 Sobic006G004600--Sobic004G210900 Sobic002G339500 Sobic002G339500 Sobic001G427500--Sobic002G339500 Sobic002G193400 Sobic002G193400 Sobic001G427500--Sobic002G193400 Sobic004G227300 Sobic004G227300 Sobic001G427500--Sobic004G227300 Sobic001G427500--Sobic006G004600 Sobic007G062500 Sobic007G062500 Sobic001G427500--Sobic007G062500 Sobic001G417900 Sobic001G417900 Sobic001G427500--Sobic001G417900 Sobic009G017400 Sobic009G017400 Sobic001G427500--Sobic009G017400 Sobic001G261597 Sobic001G261597 Sobic001G427500--Sobic001G261597 Sobic001G022600 Sobic001G022600 Sobic001G427500--Sobic001G022600 Sobic010G265800--Sobic006G004600 Sobic003G413500 Sobic003G413500 Sobic010G265800--Sobic003G413500 Sobic010G265800--Sobic003G314500 Sobic003G308700 Sobic003G308700 Sobic010G265800--Sobic003G308700 Sobic009G148900 Sobic009G148900 Sobic010G265800--Sobic009G148900 Sobic010G265800--Sobic001G387600 Sobic009G057700 Sobic009G057700 Sobic010G265800--Sobic009G057700 Sobic010G265800--Sobic001G427500 Sobic010G245100 Sobic010G245100 Sobic010G265800--Sobic010G245100 Sobic009G217100 Sobic009G217100 Sobic007G007000--Sobic009G217100 Sobic001G123000 Sobic001G123000 Sobic007G007000--Sobic001G123000 Sobic001G137300 Sobic001G137300 Sobic007G007000--Sobic001G137300 Sobic007G007000--Sobic002G251700 Sobic009G259400 Sobic009G259400 Sobic007G007000--Sobic009G259400 Sobic010G000900 Sobic010G000900 Sobic007G007000--Sobic010G000900 Sobic002G352600 Sobic002G352600 Sobic007G007000--Sobic002G352600 Sobic001G121200 Sobic001G121200 Sobic007G007000--Sobic001G121200 Sobic005G203800 Sobic005G203800 Sobic007G007000--Sobic005G203800 Sobic006G225600 Sobic006G225600 Sobic002G251700--Sobic006G225600 Sobic003G295400 Sobic003G295400 Sobic002G251700--Sobic003G295400 Sobic004G234900 Sobic004G234900 Sobic002G251700--Sobic004G234900 Sobic001G098200 Sobic001G098200 Sobic002G251700--Sobic001G098200 Sobic010G009400 Sobic010G009400 Sobic002G251700--Sobic010G009400 Sobic003G077900 Sobic003G077900 Sobic002G251700--Sobic003G077900 Sobic003G217400 Sobic003G217400 Sobic002G251700--Sobic003G217400 Sobic002G251700--Sobic007G007000 Sobic002G251700--Sobic010G000900 Sobic001G053000 Sobic001G053000 Sobic003G314500--Sobic001G053000 Sobic003G314500--Sobic010G265800 Sobic003G314500--Sobic006G004600 Sobic002G125900 Sobic002G125900 Sobic003G314500--Sobic002G125900 Sobic008G146900 Sobic008G146900 Sobic003G314500--Sobic008G146900 Sobic005G032300 Sobic005G032300 Sobic003G314500--Sobic005G032300 Sobic003G314500--Sobic001G427500 Sobic003G314500--Sobic004G210900 Sobic003G206800 Sobic003G206800 Sobic003G314500--Sobic003G206800 Sobic002G137300 Sobic002G137300 Sobic006G269000--Sobic002G137300 Sobic006G269000--Sobic006G004600 Sobic004G214100 Sobic004G214100 Sobic006G269000--Sobic004G214100 Sobic001G072800 Sobic001G072800 Sobic006G269000--Sobic001G072800 Sobic003G261900 Sobic003G261900 Sobic006G269000--Sobic003G261900 Sobic007G168200 Sobic007G168200 Sobic006G269000--Sobic007G168200 Sobic002G242200 Sobic002G242200 Sobic006G269000--Sobic002G242200 Sobic009G190800 Sobic009G190800 Sobic006G269000--Sobic009G190800 Sobic006G269000--Sobic001G417900 Sobic002G122600 Sobic002G122600 Sobic001G004700--Sobic002G122600 Sobic003G078800 Sobic003G078800 Sobic001G004700--Sobic003G078800 Sobic001G004700--Sobic004G227300 Sobic006G171700 Sobic006G171700 Sobic001G004700--Sobic006G171700 Sobic001G380500 Sobic001G380500 Sobic001G004700--Sobic001G380500 Sobic003G299000 Sobic003G299000 Sobic001G004700--Sobic003G299000 Sobic006G119800 Sobic006G119800 Sobic001G004700--Sobic006G119800 Sobic001G004700--Sobic006G004600 Sobic007G171950 Sobic007G171950 Sobic001G004700--Sobic007G171950 Sobic003G309900 Sobic003G309900 Sobic001G387600--Sobic003G309900 Sobic001G387600--Sobic006G119800 Sobic001G387600--Sobic003G413500 Sobic009G233300 Sobic009G233300 Sobic001G387600--Sobic009G233300 Sobic001G191600 Sobic001G191600 Sobic001G387600--Sobic001G191600 Sobic001G387600--Sobic008G146900 Sobic001G222250 Sobic001G222250 Sobic001G387600--Sobic001G222250 Sobic001G253700 Sobic001G253700 Sobic001G387600--Sobic001G253700 Sobic001G387600--Sobic010G009400 Sobic004G183800 Sobic004G183800 Sobic004G210900--Sobic004G183800 Sobic005G175500 Sobic005G175500 Sobic004G210900--Sobic005G175500 Sobic010G000600 Sobic010G000600 Sobic004G210900--Sobic010G000600 Sobic006G060601 Sobic006G060601 Sobic004G210900--Sobic006G060601 Sobic010G030300 Sobic010G030300 Sobic004G210900--Sobic010G030300 Sobic004G210900--Sobic008G146900 Sobic009G213800 Sobic009G213800 Sobic004G210900--Sobic009G213800 Sobic004G181700 Sobic004G181700 Sobic004G210900--Sobic004G181700 Sobic003G014300 Sobic003G014300 Sobic004G210900--Sobic003G014300
Octagon: transcription factors


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