Gene annotation
Transcriptome id Sobic.010G024100.1
Synonym emb1067, Sb10g002260
Functional annotation tRNA 2-phosphotransferase 1, putative, expressed
UniProt A0A194YGY5
Pfam PF01885
Panther DB PTHR12684 PTHR12684:SF2
NCBI CDD KOG2278; RNA:NAD 2'-phosphotransferase TPT1
KEGG Orthology K10669; TRPT1, 2'-phosphotransferase
Gene Ontology GO:0016772; transferase activity, transferring phosphorus-containing groups GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation


Orthologs (automatic annotation)
TAIR AT2G45330 : RNA 2\'-phosphotransferase, Tpt1 / KptA family
RAP-DB (Rice) LOC_Os06g04300.1 : tRNA 2-phosphotransferase 1, putative, expressed
MaizeGDB (Corn) Zm00025a050127 , Zm00025a020744
Brachypodium KQK19980 , KQK19981
Barley -
Wheat TraesCS4A02G417300 , TraesCS2A02G485300
Populus -


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cDNA sequences
Sobic.010G024100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G262000 ankyrin repeat domain containing protein, putative, expressed -
2 Sobic.010G156000 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.009G178200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
4 Sobic.001G412100 CDP-alcohol phosphatidyltransferase, putative, expressed K00995: pgsA, CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase
5 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
6 Sobic.002G332900 RNA recognition motif containing protein, putative, expressed -
7 Sobic.009G243100 pex14, putative, expressed -
8 Sobic.001G447900 OsFBO13 - F-box and other domain containing protein, expressed K10293: F-box protein 7
9 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
10 Sobic.006G168400 ethylene-responsive element-binding protein, putative, expressed -
11 Sobic.002G244500 ATP phosphoribosyltransferase, putative, expressed K00765: ATP phosphoribosyltransferase
12 Sobic.007G171950 - -
13 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
14 Sobic.002G390300 heat shock protein DnaJ, putative, expressed -
15 Sobic.002G116900 expressed protein -
16 Sobic.001G447600 squalene monooxygenase, putative, expressed K00511: SQLE, squalene monooxygenase
17 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
18 Sobic.001G380500 appr-1-p processing enzyme family protein, putative, expressed -
19 Sobic.004G115350 - K12843: PRPF3, U4/U6 small nuclear ribonucleoprotein PRP3
20 Sobic.006G183000 RING zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic010G024100 Sobic010G024100 Sobic002G262000 Sobic002G262000 Sobic010G024100--Sobic002G262000 Sobic010G156000 Sobic010G156000 Sobic010G024100--Sobic010G156000 Sobic009G178200 Sobic009G178200 Sobic010G024100--Sobic009G178200 Sobic001G412100 Sobic001G412100 Sobic010G024100--Sobic001G412100 Sobic010G265300 Sobic010G265300 Sobic010G024100--Sobic010G265300 Sobic002G332900 Sobic002G332900 Sobic010G024100--Sobic002G332900 Sobic009G243100 Sobic009G243100 Sobic010G024100--Sobic009G243100 Sobic001G447900 Sobic001G447900 Sobic010G024100--Sobic001G447900 Sobic010G108900 Sobic010G108900 Sobic010G024100--Sobic010G108900 Sobic004G356900 Sobic004G356900 Sobic002G262000--Sobic004G356900 Sobic002G071000 Sobic002G071000 Sobic002G262000--Sobic002G071000 Sobic003G117300 Sobic003G117300 Sobic002G262000--Sobic003G117300 Sobic002G262000--Sobic010G108900 Sobic006G049700 Sobic006G049700 Sobic002G262000--Sobic006G049700 Sobic001G234200 Sobic001G234200 Sobic002G262000--Sobic001G234200 Sobic006G183000 Sobic006G183000 Sobic002G262000--Sobic006G183000 Sobic004G232800 Sobic004G232800 Sobic002G262000--Sobic004G232800 Sobic004G348900 Sobic004G348900 Sobic002G262000--Sobic004G348900 Sobic002G279700 Sobic002G279700 Sobic010G156000--Sobic002G279700 Sobic002G128900 Sobic002G128900 Sobic010G156000--Sobic002G128900 Sobic010G156000--Sobic001G412100 Sobic006G130800 Sobic006G130800 Sobic010G156000--Sobic006G130800 Sobic010G156000--Sobic010G024100 Sobic001G048100 Sobic001G048100 Sobic010G156000--Sobic001G048100 Sobic003G290100 Sobic003G290100 Sobic010G156000--Sobic003G290100 Sobic010G140600 Sobic010G140600 Sobic010G156000--Sobic010G140600 Sobic010G156000--Sobic010G265300 Sobic009G178200--Sobic010G024100 Sobic003G216500 Sobic003G216500 Sobic009G178200--Sobic003G216500 Sobic008G118600 Sobic008G118600 Sobic009G178200--Sobic008G118600 Sobic005G055000 Sobic005G055000 Sobic009G178200--Sobic005G055000 Sobic007G171950 Sobic007G171950 Sobic009G178200--Sobic007G171950 Sobic004G028000 Sobic004G028000 Sobic009G178200--Sobic004G028000 Sobic004G182500 Sobic004G182500 Sobic009G178200--Sobic004G182500 Sobic001G463500 Sobic001G463500 Sobic009G178200--Sobic001G463500 Sobic007G061400 Sobic007G061400 Sobic009G178200--Sobic007G061400 Sobic005G160400 Sobic005G160400 Sobic001G412100--Sobic005G160400 Sobic007G165900 Sobic007G165900 Sobic001G412100--Sobic007G165900 Sobic001G412100--Sobic010G265300 Sobic004G257100 Sobic004G257100 Sobic001G412100--Sobic004G257100 Sobic001G412100--Sobic010G156000 Sobic008G087900 Sobic008G087900 Sobic001G412100--Sobic008G087900 Sobic002G301000 Sobic002G301000 Sobic001G412100--Sobic002G301000 Sobic001G031100 Sobic001G031100 Sobic001G412100--Sobic001G031100 Sobic007G095500 Sobic007G095500 Sobic001G412100--Sobic007G095500 Sobic001G120500 Sobic001G120500 Sobic010G265300--Sobic001G120500 Sobic010G265300--Sobic005G160400 Sobic010G092300 Sobic010G092300 Sobic010G265300--Sobic010G092300 Sobic005G172500 Sobic005G172500 Sobic010G265300--Sobic005G172500 Sobic008G076800 Sobic008G076800 Sobic010G265300--Sobic008G076800 Sobic004G092500 Sobic004G092500 Sobic010G265300--Sobic004G092500 Sobic007G084100 Sobic007G084100 Sobic010G265300--Sobic007G084100 Sobic010G265300--Sobic004G257100 Sobic001G226700 Sobic001G226700 Sobic010G265300--Sobic001G226700 Sobic001G468600 Sobic001G468600 Sobic002G332900--Sobic001G468600 Sobic004G250500 Sobic004G250500 Sobic002G332900--Sobic004G250500 Sobic004G216400 Sobic004G216400 Sobic002G332900--Sobic004G216400 Sobic003G239800 Sobic003G239800 Sobic002G332900--Sobic003G239800 Sobic004G310500 Sobic004G310500 Sobic002G332900--Sobic004G310500 Sobic002G419100 Sobic002G419100 Sobic002G332900--Sobic002G419100 Sobic004G194900 Sobic004G194900 Sobic002G332900--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic002G332900--Sobic002G394600 Sobic010G262433 Sobic010G262433 Sobic002G332900--Sobic010G262433 Sobic001G296900 Sobic001G296900 Sobic009G243100--Sobic001G296900 Sobic010G049100 Sobic010G049100 Sobic009G243100--Sobic010G049100 Sobic002G111200 Sobic002G111200 Sobic009G243100--Sobic002G111200 Sobic002G332400 Sobic002G332400 Sobic009G243100--Sobic002G332400 Sobic009G243100--Sobic002G071000 Sobic002G039000 Sobic002G039000 Sobic009G243100--Sobic002G039000 Sobic009G004600 Sobic009G004600 Sobic009G243100--Sobic009G004600 Sobic002G364800 Sobic002G364800 Sobic009G243100--Sobic002G364800 Sobic003G422900 Sobic003G422900 Sobic009G243100--Sobic003G422900 Sobic004G060600 Sobic004G060600 Sobic001G447900--Sobic004G060600 Sobic001G428100 Sobic001G428100 Sobic001G447900--Sobic001G428100 Sobic009G198500 Sobic009G198500 Sobic001G447900--Sobic009G198500 Sobic006G212100 Sobic006G212100 Sobic001G447900--Sobic006G212100 Sobic002G400000 Sobic002G400000 Sobic001G447900--Sobic002G400000 Sobic001G175800 Sobic001G175800 Sobic001G447900--Sobic001G175800 Sobic006G262900 Sobic006G262900 Sobic001G447900--Sobic006G262900 Sobic006G109700 Sobic006G109700 Sobic001G447900--Sobic006G109700 Sobic007G168600 Sobic007G168600 Sobic001G447900--Sobic007G168600 Sobic001G380500 Sobic001G380500 Sobic010G108900--Sobic001G380500 Sobic001G218800 Sobic001G218800 Sobic010G108900--Sobic001G218800 Sobic006G168400 Sobic006G168400 Sobic010G108900--Sobic006G168400 Sobic003G004700 Sobic003G004700 Sobic010G108900--Sobic003G004700 Sobic010G108900--Sobic006G183000 Sobic001G469200 Sobic001G469200 Sobic010G108900--Sobic001G469200 Sobic010G108900--Sobic002G262000 Sobic009G108500 Sobic009G108500 Sobic010G108900--Sobic009G108500 Sobic010G108900--Sobic006G109700
Octagon: transcription factors


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