Gene annotation
Transcriptome id Sobic.004G264700.1
Synonym Sb04g030280, ATP5
Functional annotation ATP synthase F1, delta subunit family protein, putative, expressed
UniProt C5Y090
Pfam PF00213
Panther DB PTHR11910 PTHR11910:SF1
NCBI CDD KOG1662; Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5
KEGG Orthology K02137; ATPeF0O, ATP5O, F-type H+-transporting ATPase subunit O
Gene Ontology GO:0015986; ATP synthesis coupled proton transport


Orthologs (automatic annotation)
TAIR AT5G13450 : delta subunit of Mt ATP synthase
RAP-DB (Rice) LOC_Os06g43850.1 : ATP synthase F1, delta subunit family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032483
Brachypodium KQK00970
Barley HORVU6Hr1G069370.3 , HORVU6Hr1G069370.2 , HORVU6Hr1G069370.1
Wheat TraesCS6D02G255500 , TraesCS6A02G275200 , TraesCS6A02G275200 , TraesCS6A02G275200 , TraesCS6B02G302700 , TraesCS6B02G302700
Populus -


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cDNA sequences
Sobic.004G264700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
2 Sobic.007G192700 nascent polypeptide-associated complex subunit alpha, putative, expressed K03626: EGD2, nascent polypeptide-associated complex subunit alpha
3 Sobic.002G196350 - K14011: UBXN6, UBX domain-containing protein 6
4 Sobic.002G159500 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
5 Sobic.002G424350 - K02183: calmodulin
6 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
7 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
8 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
9 Sobic.001G018500 expressed protein K17784: MINOS1, mitochondrial inner membrane organizing system protein 1
10 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
11 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
12 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
13 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
14 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
15 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
16 Sobic.004G306200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
17 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
18 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
19 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
20 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit


Gene co-expression network
sample Sobic004G264700 Sobic004G264700 Sobic003G218400 Sobic003G218400 Sobic004G264700--Sobic003G218400 Sobic007G192700 Sobic007G192700 Sobic004G264700--Sobic007G192700 Sobic002G196350 Sobic002G196350 Sobic004G264700--Sobic002G196350 Sobic002G159500 Sobic002G159500 Sobic004G264700--Sobic002G159500 Sobic002G424350 Sobic002G424350 Sobic004G264700--Sobic002G424350 Sobic002G418400 Sobic002G418400 Sobic004G264700--Sobic002G418400 Sobic001G030300 Sobic001G030300 Sobic004G264700--Sobic001G030300 Sobic001G404800 Sobic001G404800 Sobic004G264700--Sobic001G404800 Sobic001G018500 Sobic001G018500 Sobic004G264700--Sobic001G018500 Sobic001G047800 Sobic001G047800 Sobic003G218400--Sobic001G047800 Sobic004G260200 Sobic004G260200 Sobic003G218400--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic003G218400--Sobic002G309700 Sobic003G218400--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic003G218400--Sobic003G215700 Sobic003G218400--Sobic001G404800 Sobic007G013900 Sobic007G013900 Sobic003G218400--Sobic007G013900 Sobic004G170400 Sobic004G170400 Sobic003G218400--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic003G218400--Sobic001G074700 Sobic001G371400 Sobic001G371400 Sobic007G192700--Sobic001G371400 Sobic001G493001 Sobic001G493001 Sobic007G192700--Sobic001G493001 Sobic004G055700 Sobic004G055700 Sobic007G192700--Sobic004G055700 Sobic003G150000 Sobic003G150000 Sobic007G192700--Sobic003G150000 Sobic001G361600 Sobic001G361600 Sobic007G192700--Sobic001G361600 Sobic004G008400 Sobic004G008400 Sobic007G192700--Sobic004G008400 Sobic003G078200 Sobic003G078200 Sobic007G192700--Sobic003G078200 Sobic001G018900 Sobic001G018900 Sobic007G192700--Sobic001G018900 Sobic006G067800 Sobic006G067800 Sobic007G192700--Sobic006G067800 Sobic010G213400 Sobic010G213400 Sobic002G196350--Sobic010G213400 Sobic006G062800 Sobic006G062800 Sobic002G196350--Sobic006G062800 Sobic004G026200 Sobic004G026200 Sobic002G196350--Sobic004G026200 Sobic003G063200 Sobic003G063200 Sobic002G196350--Sobic003G063200 Sobic005G028700 Sobic005G028700 Sobic002G196350--Sobic005G028700 Sobic008G185400 Sobic008G185400 Sobic002G196350--Sobic008G185400 Sobic009G129000 Sobic009G129000 Sobic002G196350--Sobic009G129000 Sobic002G046100 Sobic002G046100 Sobic002G196350--Sobic002G046100 Sobic009G033700 Sobic009G033700 Sobic002G196350--Sobic009G033700 Sobic003G189000 Sobic003G189000 Sobic002G159500--Sobic003G189000 Sobic002G376500 Sobic002G376500 Sobic002G159500--Sobic002G376500 Sobic002G222900 Sobic002G222900 Sobic002G159500--Sobic002G222900 Sobic003G104700 Sobic003G104700 Sobic002G159500--Sobic003G104700 Sobic004G130100 Sobic004G130100 Sobic002G159500--Sobic004G130100 Sobic002G159500--Sobic002G196350 Sobic006G141500 Sobic006G141500 Sobic002G159500--Sobic006G141500 Sobic007G096700 Sobic007G096700 Sobic002G159500--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic002G159500--Sobic001G501200 Sobic002G424350--Sobic007G192700 Sobic007G139100 Sobic007G139100 Sobic002G424350--Sobic007G139100 Sobic009G198200 Sobic009G198200 Sobic002G424350--Sobic009G198200 Sobic002G424350--Sobic004G264700 Sobic004G203200 Sobic004G203200 Sobic002G424350--Sobic004G203200 Sobic010G063801 Sobic010G063801 Sobic002G424350--Sobic010G063801 Sobic003G306100 Sobic003G306100 Sobic002G424350--Sobic003G306100 Sobic010G009300 Sobic010G009300 Sobic002G424350--Sobic010G009300 Sobic004G171400 Sobic004G171400 Sobic002G424350--Sobic004G171400 Sobic006G083500 Sobic006G083500 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic003G209000 Sobic003G209000 Sobic002G418400--Sobic003G209000 Sobic002G398901 Sobic002G398901 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic002G418400--Sobic001G047800 Sobic004G259200 Sobic004G259200 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800 Sobic002G135200 Sobic002G135200 Sobic001G030300--Sobic002G135200 Sobic009G179100 Sobic009G179100 Sobic001G030300--Sobic009G179100 Sobic006G261900 Sobic006G261900 Sobic001G030300--Sobic006G261900 Sobic001G513500 Sobic001G513500 Sobic001G030300--Sobic001G513500 Sobic010G023900 Sobic010G023900 Sobic001G030300--Sobic010G023900 Sobic009G101700 Sobic009G101700 Sobic001G030300--Sobic009G101700 Sobic009G119900 Sobic009G119900 Sobic001G030300--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic001G030300--Sobic002G356400 Sobic002G296200 Sobic002G296200 Sobic001G030300--Sobic002G296200 Sobic001G404800--Sobic003G209000 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic001G404800--Sobic002G418400 Sobic001G404800--Sobic002G356400 Sobic001G404800--Sobic002G309700 Sobic001G404800--Sobic006G083500 Sobic001G404800--Sobic004G260200 Sobic001G018500--Sobic003G209000 Sobic007G051000 Sobic007G051000 Sobic001G018500--Sobic007G051000 Sobic001G018500--Sobic004G211833 Sobic001G018500--Sobic010G012500 Sobic001G018500--Sobic004G259200 Sobic004G310300 Sobic004G310300 Sobic001G018500--Sobic004G310300 Sobic001G018500--Sobic001G404800 Sobic001G018500--Sobic002G418400 Sobic009G076400 Sobic009G076400 Sobic001G018500--Sobic009G076400
Octagon: transcription factors


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