Gene annotation
Transcriptome id Sobic.002G424350.1
Synonym -
Functional annotation -
UniProt A0A1B6QGF6
Pfam PF13499 PF03959
Panther DB PTHR22778 PTHR22778:SF22
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K02183; calmodulin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27030 : calmodulin 5
RAP-DB (Rice) LOC_Os07g48770.1 : serine hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049218 , Zm00025a002229 , Zm00025a015475 , Zm00025a052528 , Zm00025a035250 , Zm00025a015474
Brachypodium KQK05657 , PNT70357 , KQK03947 , PNT70323 , PNT70324 , PNT77520 , PNT74543 , PNT74544 , PNT74545 , PNT74546
Barley HORVU2Hr1G016740.8 , HORVU2Hr1G016740.9 , HORVU2Hr1G016740.4 , HORVU2Hr1G016740.5 , HORVU2Hr1G016740.6 , HORVU2Hr1G016740.7 , HORVU2Hr1G016740.1 , HORVU2Hr1G016740.2 , HORVU2Hr1G016740.3 , HORVU3Hr1G040040.1 , HORVU3Hr1G040040.3 , HORVU3Hr1G040040.2 , HORVU3Hr1G079210.4 , HORVU3Hr1G079210.7 , HORVU3Hr1G079210.8 , HORVU3Hr1G079210.9 , HORVU2Hr1G016740.18 , HORVU2Hr1G016740.16 , HORVU2Hr1G016740.17 , HORVU2Hr1G016740.14 , HORVU2Hr1G016740.15 , HORVU2Hr1G016740.12 , HORVU2Hr1G016740.13 , HORVU2Hr1G016740.10 , HORVU2Hr1G016740.11
Wheat TraesCS3A02G184500 , TraesCS3B02G219900 , TraesCS3B02G219900 , TraesCS3D02G194500 , TraesCS3D02G194500 , TraesCS2D02G097600 , TraesCS4B02G178200 , TraesCS2A02G098100 , TraesCS3D02G188600 , TraesCS3A02G191900 , TraesCS3B02G214400 , TraesCS1D02G308100 , TraesCS3B02G219900 , TraesCS2D02G097500 , TraesCS1B02G319400 , TraesCS1B02G319400 , TraesCS2B02G113800 , TraesCS2B02G113800 , TraesCS3A02G191900 , TraesCS2B02G113900 , TraesCS2A02G098200
Populus PNT19123 , PNT19124


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G192700 nascent polypeptide-associated complex subunit alpha, putative, expressed K03626: EGD2, nascent polypeptide-associated complex subunit alpha
2 Sobic.007G139100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
3 Sobic.009G198200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat- and acid-stable phosphoprotein, putative, expressed -
4 Sobic.004G264700 ATP synthase F1, delta subunit family protein, putative, expressed K02137: ATPeF0O, ATP5O, F-type H+-transporting ATPase subunit O
5 Sobic.004G203200 BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed -
6 Sobic.010G063801 - K02924: RP-L39e, large subunit ribosomal protein L39e
7 Sobic.003G306100 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
8 Sobic.010G009300 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
9 Sobic.004G171400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.001G351000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
11 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
12 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
13 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
14 Sobic.006G148900 phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
15 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
16 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
17 Sobic.003G044400 LSM domain containing protein, expressed K11098: SNRPF, small nuclear ribonucleoprotein F
18 Sobic.010G041600 profilin domain containing protein, expressed K05759: profilin
19 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
20 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -


Gene co-expression network
sample Sobic002G424350 Sobic002G424350 Sobic007G192700 Sobic007G192700 Sobic002G424350--Sobic007G192700 Sobic007G139100 Sobic007G139100 Sobic002G424350--Sobic007G139100 Sobic009G198200 Sobic009G198200 Sobic002G424350--Sobic009G198200 Sobic004G264700 Sobic004G264700 Sobic002G424350--Sobic004G264700 Sobic004G203200 Sobic004G203200 Sobic002G424350--Sobic004G203200 Sobic010G063801 Sobic010G063801 Sobic002G424350--Sobic010G063801 Sobic003G306100 Sobic003G306100 Sobic002G424350--Sobic003G306100 Sobic010G009300 Sobic010G009300 Sobic002G424350--Sobic010G009300 Sobic004G171400 Sobic004G171400 Sobic002G424350--Sobic004G171400 Sobic001G371400 Sobic001G371400 Sobic007G192700--Sobic001G371400 Sobic001G493001 Sobic001G493001 Sobic007G192700--Sobic001G493001 Sobic004G055700 Sobic004G055700 Sobic007G192700--Sobic004G055700 Sobic003G150000 Sobic003G150000 Sobic007G192700--Sobic003G150000 Sobic001G361600 Sobic001G361600 Sobic007G192700--Sobic001G361600 Sobic004G008400 Sobic004G008400 Sobic007G192700--Sobic004G008400 Sobic003G078200 Sobic003G078200 Sobic007G192700--Sobic003G078200 Sobic001G018900 Sobic001G018900 Sobic007G192700--Sobic001G018900 Sobic006G067800 Sobic006G067800 Sobic007G192700--Sobic006G067800 Sobic007G139100--Sobic006G067800 Sobic004G205100 Sobic004G205100 Sobic007G139100--Sobic004G205100 Sobic003G436700 Sobic003G436700 Sobic007G139100--Sobic003G436700 Sobic001G402050 Sobic001G402050 Sobic007G139100--Sobic001G402050 Sobic006G083500 Sobic006G083500 Sobic007G139100--Sobic006G083500 Sobic007G139100--Sobic004G171400 Sobic009G215200 Sobic009G215200 Sobic007G139100--Sobic009G215200 Sobic007G184600 Sobic007G184600 Sobic007G139100--Sobic007G184600 Sobic007G139100--Sobic010G063801 Sobic009G128700 Sobic009G128700 Sobic009G198200--Sobic009G128700 Sobic008G025600 Sobic008G025600 Sobic009G198200--Sobic008G025600 Sobic003G437100 Sobic003G437100 Sobic009G198200--Sobic003G437100 Sobic001G339700 Sobic001G339700 Sobic009G198200--Sobic001G339700 Sobic003G426000 Sobic003G426000 Sobic009G198200--Sobic003G426000 Sobic005G101800 Sobic005G101800 Sobic009G198200--Sobic005G101800 Sobic003G252800 Sobic003G252800 Sobic009G198200--Sobic003G252800 Sobic010G084400 Sobic010G084400 Sobic009G198200--Sobic010G084400 Sobic007G067600 Sobic007G067600 Sobic009G198200--Sobic007G067600 Sobic003G218400 Sobic003G218400 Sobic004G264700--Sobic003G218400 Sobic004G264700--Sobic007G192700 Sobic002G196350 Sobic002G196350 Sobic004G264700--Sobic002G196350 Sobic002G159500 Sobic002G159500 Sobic004G264700--Sobic002G159500 Sobic004G264700--Sobic002G424350 Sobic002G418400 Sobic002G418400 Sobic004G264700--Sobic002G418400 Sobic001G030300 Sobic001G030300 Sobic004G264700--Sobic001G030300 Sobic001G404800 Sobic001G404800 Sobic004G264700--Sobic001G404800 Sobic001G018500 Sobic001G018500 Sobic004G264700--Sobic001G018500 Sobic004G332500 Sobic004G332500 Sobic004G203200--Sobic004G332500 Sobic001G169500 Sobic001G169500 Sobic004G203200--Sobic001G169500 Sobic004G336500 Sobic004G336500 Sobic004G203200--Sobic004G336500 Sobic006G046900 Sobic006G046900 Sobic004G203200--Sobic006G046900 Sobic003G319500 Sobic003G319500 Sobic004G203200--Sobic003G319500 Sobic003G084400 Sobic003G084400 Sobic004G203200--Sobic003G084400 Sobic005G011300 Sobic005G011300 Sobic004G203200--Sobic005G011300 Sobic001G139100 Sobic001G139100 Sobic004G203200--Sobic001G139100 Sobic004G340900 Sobic004G340900 Sobic004G203200--Sobic004G340900 Sobic002G081600 Sobic002G081600 Sobic010G063801--Sobic002G081600 Sobic002G200600 Sobic002G200600 Sobic010G063801--Sobic002G200600 Sobic006G116700 Sobic006G116700 Sobic010G063801--Sobic006G116700 Sobic010G251600 Sobic010G251600 Sobic010G063801--Sobic010G251600 Sobic001G130301 Sobic001G130301 Sobic010G063801--Sobic001G130301 Sobic010G063801--Sobic003G436700 Sobic009G105700 Sobic009G105700 Sobic010G063801--Sobic009G105700 Sobic010G063801--Sobic009G215200 Sobic001G374700 Sobic001G374700 Sobic010G063801--Sobic001G374700 Sobic001G351000 Sobic001G351000 Sobic003G306100--Sobic001G351000 Sobic004G065500 Sobic004G065500 Sobic003G306100--Sobic004G065500 Sobic001G034700 Sobic001G034700 Sobic003G306100--Sobic001G034700 Sobic003G285800 Sobic003G285800 Sobic003G306100--Sobic003G285800 Sobic010G041600 Sobic010G041600 Sobic003G306100--Sobic010G041600 Sobic003G306100--Sobic003G150000 Sobic001G477300 Sobic001G477300 Sobic003G306100--Sobic001G477300 Sobic010G086200 Sobic010G086200 Sobic003G306100--Sobic010G086200 Sobic005G168100 Sobic005G168100 Sobic003G306100--Sobic005G168100 Sobic001G177800 Sobic001G177800 Sobic010G009300--Sobic001G177800 Sobic010G009300--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic010G009300--Sobic009G139400 Sobic002G187500 Sobic002G187500 Sobic010G009300--Sobic002G187500 Sobic002G190900 Sobic002G190900 Sobic010G009300--Sobic002G190900 Sobic001G252300 Sobic001G252300 Sobic010G009300--Sobic001G252300 Sobic009G077800 Sobic009G077800 Sobic010G009300--Sobic009G077800 Sobic006G099900 Sobic006G099900 Sobic010G009300--Sobic006G099900 Sobic004G107700 Sobic004G107700 Sobic010G009300--Sobic004G107700 Sobic004G171400--Sobic005G011300 Sobic003G393900 Sobic003G393900 Sobic004G171400--Sobic003G393900 Sobic004G141200 Sobic004G141200 Sobic004G171400--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic004G171400--Sobic001G140900 Sobic004G100700 Sobic004G100700 Sobic004G171400--Sobic004G100700 Sobic003G228900 Sobic003G228900 Sobic004G171400--Sobic003G228900 Sobic001G459800 Sobic001G459800 Sobic004G171400--Sobic001G459800 Sobic002G188900 Sobic002G188900 Sobic004G171400--Sobic002G188900 Sobic003G369100 Sobic003G369100 Sobic004G171400--Sobic003G369100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.