Gene annotation
Transcriptome id Sobic.001G351000.1
Synonym Sb01g033590
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed
UniProt C5WXQ3
Pfam PF01474
Panther DB PTHR21337 PTHR21337:SF5
NCBI CDD -
KEGG Orthology K01626; E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
Gene Ontology GO:0009073; aromatic amino acid family biosynthetic process GO:00038493-deoxy-7-phosphoheptulonate synthase activity


Orthologs (automatic annotation)
TAIR AT1G22410 : Class-II DAHP synthetase family protein
RAP-DB (Rice) LOC_Os03g27230.1 : phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a014474 , Zm00025a015237 , Zm00025a033710 , Zm00025a023917 , Zm00025a002725 , Zm00025a029047 , Zm00025a048792
Brachypodium KQK21438
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G351000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
2 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
3 Sobic.004G171400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
5 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
6 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
7 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
8 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
9 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
10 Sobic.004G259366 - -
11 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
13 Sobic.010G012500 ATOZI1, putative, expressed -
14 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
15 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
16 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
17 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b
18 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
19 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
20 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -


Gene co-expression network
sample Sobic001G351000 Sobic001G351000 Sobic004G065500 Sobic004G065500 Sobic001G351000--Sobic004G065500 Sobic004G220000 Sobic004G220000 Sobic001G351000--Sobic004G220000 Sobic004G171400 Sobic004G171400 Sobic001G351000--Sobic004G171400 Sobic001G459800 Sobic001G459800 Sobic001G351000--Sobic001G459800 Sobic006G267200 Sobic006G267200 Sobic001G351000--Sobic006G267200 Sobic009G141800 Sobic009G141800 Sobic001G351000--Sobic009G141800 Sobic003G393900 Sobic003G393900 Sobic001G351000--Sobic003G393900 Sobic005G113300 Sobic005G113300 Sobic001G351000--Sobic005G113300 Sobic003G228900 Sobic003G228900 Sobic001G351000--Sobic003G228900 Sobic004G065500--Sobic006G267200 Sobic004G065500--Sobic001G459800 Sobic004G065500--Sobic003G393900 Sobic007G074000 Sobic007G074000 Sobic004G065500--Sobic007G074000 Sobic010G086200 Sobic010G086200 Sobic004G065500--Sobic010G086200 Sobic004G306300 Sobic004G306300 Sobic004G065500--Sobic004G306300 Sobic004G065500--Sobic003G228900 Sobic004G321300 Sobic004G321300 Sobic004G065500--Sobic004G321300 Sobic009G247900 Sobic009G247900 Sobic004G065500--Sobic009G247900 Sobic004G220000--Sobic005G113300 Sobic004G211833 Sobic004G211833 Sobic004G220000--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic004G220000--Sobic010G012500 Sobic002G398901 Sobic002G398901 Sobic004G220000--Sobic002G398901 Sobic001G295200 Sobic001G295200 Sobic004G220000--Sobic001G295200 Sobic006G083500 Sobic006G083500 Sobic004G220000--Sobic006G083500 Sobic009G188000 Sobic009G188000 Sobic004G220000--Sobic009G188000 Sobic001G361600 Sobic001G361600 Sobic004G220000--Sobic001G361600 Sobic001G130301 Sobic001G130301 Sobic004G220000--Sobic001G130301 Sobic005G011300 Sobic005G011300 Sobic004G171400--Sobic005G011300 Sobic004G171400--Sobic003G393900 Sobic004G141200 Sobic004G141200 Sobic004G171400--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic004G171400--Sobic001G140900 Sobic004G100700 Sobic004G100700 Sobic004G171400--Sobic004G100700 Sobic004G171400--Sobic003G228900 Sobic004G171400--Sobic001G459800 Sobic002G188900 Sobic002G188900 Sobic004G171400--Sobic002G188900 Sobic003G369100 Sobic003G369100 Sobic004G171400--Sobic003G369100 Sobic001G391500 Sobic001G391500 Sobic001G459800--Sobic001G391500 Sobic001G459800--Sobic006G267200 Sobic001G459800--Sobic004G141200 Sobic001G459800--Sobic003G393900 Sobic001G459800--Sobic003G228900 Sobic001G459800--Sobic004G065500 Sobic001G138600 Sobic001G138600 Sobic001G459800--Sobic001G138600 Sobic001G459800--Sobic007G074000 Sobic001G459800--Sobic005G011300 Sobic006G267200--Sobic001G459800 Sobic006G267200--Sobic004G065500 Sobic006G267200--Sobic003G393900 Sobic001G405500 Sobic001G405500 Sobic006G267200--Sobic001G405500 Sobic006G267200--Sobic009G141800 Sobic006G267200--Sobic010G086200 Sobic004G146000 Sobic004G146000 Sobic006G267200--Sobic004G146000 Sobic006G267200--Sobic004G141200 Sobic001G320900 Sobic001G320900 Sobic006G267200--Sobic001G320900 Sobic009G141800--Sobic006G267200 Sobic009G141800--Sobic010G086200 Sobic009G141800--Sobic003G393900 Sobic009G141800--Sobic004G065500 Sobic004G187900 Sobic004G187900 Sobic009G141800--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic009G141800--Sobic001G281400 Sobic009G008900 Sobic009G008900 Sobic009G141800--Sobic009G008900 Sobic003G387000 Sobic003G387000 Sobic009G141800--Sobic003G387000 Sobic009G141800--Sobic001G459800 Sobic003G393900--Sobic004G141200 Sobic001G108200 Sobic001G108200 Sobic003G393900--Sobic001G108200 Sobic003G393900--Sobic001G459800 Sobic003G393900--Sobic004G100700 Sobic003G393900--Sobic002G188900 Sobic003G393900--Sobic004G065500 Sobic003G393900--Sobic006G267200 Sobic003G393900--Sobic005G011300 Sobic003G393900--Sobic003G369100 Sobic005G113300--Sobic004G220000 Sobic005G113300--Sobic001G295200 Sobic005G113300--Sobic001G361600 Sobic006G116700 Sobic006G116700 Sobic005G113300--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic005G113300--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic003G160700 Sobic003G160700 Sobic005G113300--Sobic003G160700 Sobic006G075400 Sobic006G075400 Sobic003G228900--Sobic006G075400 Sobic010G209200 Sobic010G209200 Sobic003G228900--Sobic010G209200 Sobic009G184000 Sobic009G184000 Sobic003G228900--Sobic009G184000 Sobic004G191400 Sobic004G191400 Sobic003G228900--Sobic004G191400 Sobic003G432700 Sobic003G432700 Sobic003G228900--Sobic003G432700 Sobic003G260300 Sobic003G260300 Sobic003G228900--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic003G228900--Sobic007G017500 Sobic009G122400 Sobic009G122400 Sobic003G228900--Sobic009G122400 Sobic001G079300 Sobic001G079300 Sobic003G228900--Sobic001G079300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.