Gene annotation
Transcriptome id Sobic.003G306100.1
Synonym ATCM1, Sb03g035460, CM1
Functional annotation chorismate mutase, chloroplast precursor, putative, expressed
UniProt C5XKW2
Pfam -
Panther DB PTHR21145 PTHR21145:SF0
NCBI CDD KOG0795; Chorismate mutase
KEGG Orthology K01850; chorismate mutase
Gene Ontology GO:0009073; aromatic amino acid family biosynthetic process GO:0004106chorismate mutase activity


Orthologs (automatic annotation)
TAIR AT3G29200 : chorismate mutase 1
RAP-DB (Rice) LOC_Os01g55870.1 : chorismate mutase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039956 , Zm00025a027442
Brachypodium KQK09890
Barley HORVU3Hr1G074220.2 , HORVU3Hr1G074220.1 , HORVU3Hr1G074220.6 , HORVU3Hr1G074220.7 , HORVU3Hr1G074220.4 , HORVU3Hr1G074220.5 , HORVU3Hr1G074220.8 , HORVU3Hr1G074220.9 , HORVU3Hr1G074220.10 , HORVU3Hr1G074220.11
Wheat TraesCS3B02G334900 , TraesCS3D02G300200 , TraesCS3D02G300200 , TraesCS3A02G301800 , TraesCS3A02G301800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G351000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
2 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
3 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
4 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
5 Sobic.010G041600 profilin domain containing protein, expressed K05759: profilin
6 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
7 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
8 Sobic.010G086200 GRAM domain containing protein, expressed -
9 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
10 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
12 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -
13 Sobic.005G028700 peflin, putative, expressed K13448: calcium-binding protein CML
14 Sobic.004G171400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
16 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
17 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
18 Sobic.002G393400 chaperonin, putative, expressed K04078: groES, chaperonin GroES
19 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
20 Sobic.001G432000 LYR motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G306100 Sobic003G306100 Sobic001G351000 Sobic001G351000 Sobic003G306100--Sobic001G351000 Sobic004G065500 Sobic004G065500 Sobic003G306100--Sobic004G065500 Sobic001G034700 Sobic001G034700 Sobic003G306100--Sobic001G034700 Sobic003G285800 Sobic003G285800 Sobic003G306100--Sobic003G285800 Sobic010G041600 Sobic010G041600 Sobic003G306100--Sobic010G041600 Sobic003G150000 Sobic003G150000 Sobic003G306100--Sobic003G150000 Sobic001G477300 Sobic001G477300 Sobic003G306100--Sobic001G477300 Sobic010G086200 Sobic010G086200 Sobic003G306100--Sobic010G086200 Sobic005G168100 Sobic005G168100 Sobic003G306100--Sobic005G168100 Sobic001G351000--Sobic004G065500 Sobic004G220000 Sobic004G220000 Sobic001G351000--Sobic004G220000 Sobic004G171400 Sobic004G171400 Sobic001G351000--Sobic004G171400 Sobic001G459800 Sobic001G459800 Sobic001G351000--Sobic001G459800 Sobic006G267200 Sobic006G267200 Sobic001G351000--Sobic006G267200 Sobic009G141800 Sobic009G141800 Sobic001G351000--Sobic009G141800 Sobic003G393900 Sobic003G393900 Sobic001G351000--Sobic003G393900 Sobic005G113300 Sobic005G113300 Sobic001G351000--Sobic005G113300 Sobic003G228900 Sobic003G228900 Sobic001G351000--Sobic003G228900 Sobic004G065500--Sobic006G267200 Sobic004G065500--Sobic001G459800 Sobic004G065500--Sobic003G393900 Sobic007G074000 Sobic007G074000 Sobic004G065500--Sobic007G074000 Sobic004G065500--Sobic010G086200 Sobic004G306300 Sobic004G306300 Sobic004G065500--Sobic004G306300 Sobic004G065500--Sobic003G228900 Sobic004G321300 Sobic004G321300 Sobic004G065500--Sobic004G321300 Sobic009G247900 Sobic009G247900 Sobic004G065500--Sobic009G247900 Sobic001G034700--Sobic010G041600 Sobic001G086300 Sobic001G086300 Sobic001G034700--Sobic001G086300 Sobic001G048832 Sobic001G048832 Sobic001G034700--Sobic001G048832 Sobic009G176000 Sobic009G176000 Sobic001G034700--Sobic009G176000 Sobic007G051000 Sobic007G051000 Sobic001G034700--Sobic007G051000 Sobic005G188100 Sobic005G188100 Sobic001G034700--Sobic005G188100 Sobic001G034700--Sobic003G285800 Sobic010G178200 Sobic010G178200 Sobic001G034700--Sobic010G178200 Sobic001G034700--Sobic003G150000 Sobic002G046100 Sobic002G046100 Sobic003G285800--Sobic002G046100 Sobic002G187500 Sobic002G187500 Sobic003G285800--Sobic002G187500 Sobic003G285800--Sobic010G178200 Sobic003G350300 Sobic003G350300 Sobic003G285800--Sobic003G350300 Sobic002G345300 Sobic002G345300 Sobic003G285800--Sobic002G345300 Sobic003G285800--Sobic001G477300 Sobic001G281400 Sobic001G281400 Sobic003G285800--Sobic001G281400 Sobic003G285800--Sobic010G086200 Sobic009G129000 Sobic009G129000 Sobic003G285800--Sobic009G129000 Sobic010G041600--Sobic001G034700 Sobic010G041600--Sobic001G281400 Sobic004G272800 Sobic004G272800 Sobic010G041600--Sobic004G272800 Sobic002G190900 Sobic002G190900 Sobic010G041600--Sobic002G190900 Sobic008G185400 Sobic008G185400 Sobic010G041600--Sobic008G185400 Sobic010G041600--Sobic001G086300 Sobic010G041600--Sobic010G178200 Sobic008G129400 Sobic008G129400 Sobic010G041600--Sobic008G129400 Sobic010G041600--Sobic007G051000 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic010G204500 Sobic010G204500 Sobic003G150000--Sobic010G204500 Sobic003G249700 Sobic003G249700 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic001G054900 Sobic001G054900 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800 Sobic001G124600 Sobic001G124600 Sobic001G477300--Sobic001G124600 Sobic004G187900 Sobic004G187900 Sobic001G477300--Sobic004G187900 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic001G477300--Sobic006G267200 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic001G477300--Sobic004G065500 Sobic010G086200--Sobic006G267200 Sobic010G086200--Sobic004G065500 Sobic010G086200--Sobic004G321300 Sobic010G086200--Sobic009G141800 Sobic010G086200--Sobic009G129000 Sobic009G143400 Sobic009G143400 Sobic010G086200--Sobic009G143400 Sobic010G086200--Sobic001G459800 Sobic009G033700 Sobic009G033700 Sobic010G086200--Sobic009G033700 Sobic010G086200--Sobic003G393900 Sobic009G232900 Sobic009G232900 Sobic005G168100--Sobic009G232900 Sobic001G432000 Sobic001G432000 Sobic005G168100--Sobic001G432000 Sobic006G156000 Sobic006G156000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic005G168100--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic005G168100--Sobic003G150000
Octagon: transcription factors


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