Gene annotation
Transcriptome id Sobic.007G139100.1
Synonym ASK2, Sb07g021450, SKP1B
Functional annotation SKP1-like protein 1B, putative, expressed
UniProt C5YLA2
Pfam PF03931 PF01466
Panther DB PTHR11165
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology K03094; SKP1, S-phase kinase-associated protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT1G75950 : S phase kinase-associated protein 1
RAP-DB (Rice) LOC_Os09g36830.1 : Skp1 family, dimerisation domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015845 , Zm00025a018627 , Zm00025a015847 , Zm00025a015846 , Zm00025a015852 , Zm00025a029772 , Zm00025a015913 , Zm00025a015850 , Zm00025a028498 , Zm00025a028499
Brachypodium KQJ99541 , KQJ92734 , KQJ88553
Barley HORVU3Hr1G089860.1 , HORVU3Hr1G089860.2 , HORVU3Hr1G089860.3 , HORVU3Hr1G089860.4 , HORVU3Hr1G089860.5 , HORVU3Hr1G089860.6 , HORVU5Hr1G110790.1 , HORVU5Hr1G110760.1 , HORVU5Hr1G110760.2 , HORVU6Hr1G000640.13 , HORVU5Hr1G110820.3 , HORVU5Hr1G110820.2 , HORVU5Hr1G110820.1 , HORVU7Hr1G099840.1 , HORVU2Hr1G115400.1 , HORVU2Hr1G115400.3 , HORVU2Hr1G115400.2 , HORVU5Hr1G110810.3 , HORVU6Hr1G000640.14 , HORVU6Hr1G000640.15 , HORVU6Hr1G000640.16 , HORVU6Hr1G000640.17 , HORVU5Hr1G110830.1 , HORVU5Hr1G110830.2 , HORVU5Hr1G110830.3 , HORVU6Hr1G000640.18 , HORVU6Hr1G000640.19 , HORVU2Hr1G115420.1 , HORVU7Hr1G002220.4 , HORVU7Hr1G002220.3 , HORVU7Hr1G002220.2 , HORVU7Hr1G002220.1 , HORVU5Hr1G110840.1 , HORVU5Hr1G110800.1 , HORVU7Hr1G099950.1 , HORVU6Hr1G000640.20 , HORVU6Hr1G000640.23 , HORVU6Hr1G000640.22 , HORVU6Hr1G000640.24 , HORVU7Hr1G099790.3 , HORVU7Hr1G099790.2 , HORVU7Hr1G099790.1 , HORVU5Hr1G110810.2 , HORVU6Hr1G000660.1 , HORVU6Hr1G000660.2 , HORVU5Hr1G110810.1
Wheat TraesCS4A02G472600 , TraesCS6A02G000300 , TraesCS7A02G020600 , TraesCS5D02G105800 , TraesCS3B02G027600 , TraesCS7D02G016900 , TraesCS5D02G337200 , TraesCS6B02G008800 , TraesCS6B02G053400 , TraesCS6D02G001600 , TraesCS6D02G002600 , TraesCS6B02G004300 , TraesCS4A02G379700 , TraesCS5A02G331300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
2 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
3 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
4 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
5 Sobic.006G083500 SLL1 protein, putative, expressed -
6 Sobic.004G171400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
8 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
9 Sobic.010G063801 - K02924: RP-L39e, large subunit ribosomal protein L39e
10 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
11 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
12 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
13 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
14 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
15 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
16 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
17 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
18 Sobic.002G398901 - -
19 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
20 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e


Gene co-expression network
sample Sobic007G139100 Sobic007G139100 Sobic006G067800 Sobic006G067800 Sobic007G139100--Sobic006G067800 Sobic004G205100 Sobic004G205100 Sobic007G139100--Sobic004G205100 Sobic003G436700 Sobic003G436700 Sobic007G139100--Sobic003G436700 Sobic001G402050 Sobic001G402050 Sobic007G139100--Sobic001G402050 Sobic006G083500 Sobic006G083500 Sobic007G139100--Sobic006G083500 Sobic004G171400 Sobic004G171400 Sobic007G139100--Sobic004G171400 Sobic009G215200 Sobic009G215200 Sobic007G139100--Sobic009G215200 Sobic007G184600 Sobic007G184600 Sobic007G139100--Sobic007G184600 Sobic010G063801 Sobic010G063801 Sobic007G139100--Sobic010G063801 Sobic002G200600 Sobic002G200600 Sobic006G067800--Sobic002G200600 Sobic002G081600 Sobic002G081600 Sobic006G067800--Sobic002G081600 Sobic006G067800--Sobic001G402050 Sobic006G116700 Sobic006G116700 Sobic006G067800--Sobic006G116700 Sobic009G050300 Sobic009G050300 Sobic006G067800--Sobic009G050300 Sobic006G067800--Sobic009G215200 Sobic007G197800 Sobic007G197800 Sobic006G067800--Sobic007G197800 Sobic006G067800--Sobic003G436700 Sobic001G130301 Sobic001G130301 Sobic006G067800--Sobic001G130301 Sobic003G352300 Sobic003G352300 Sobic004G205100--Sobic003G352300 Sobic006G092500 Sobic006G092500 Sobic004G205100--Sobic006G092500 Sobic009G183400 Sobic009G183400 Sobic004G205100--Sobic009G183400 Sobic009G159400 Sobic009G159400 Sobic004G205100--Sobic009G159400 Sobic001G476500 Sobic001G476500 Sobic004G205100--Sobic001G476500 Sobic004G205100--Sobic007G184600 Sobic005G091500 Sobic005G091500 Sobic004G205100--Sobic005G091500 Sobic006G099900 Sobic006G099900 Sobic004G205100--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic004G205100--Sobic003G417800 Sobic004G008400 Sobic004G008400 Sobic003G436700--Sobic004G008400 Sobic003G436700--Sobic006G116700 Sobic003G436700--Sobic009G050300 Sobic010G251600 Sobic010G251600 Sobic003G436700--Sobic010G251600 Sobic003G436700--Sobic006G067800 Sobic007G178600 Sobic007G178600 Sobic003G436700--Sobic007G178600 Sobic003G436700--Sobic002G081600 Sobic003G436700--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic003G436700--Sobic002G379500 Sobic001G402050--Sobic002G200600 Sobic001G374700 Sobic001G374700 Sobic001G402050--Sobic001G374700 Sobic001G402050--Sobic007G184600 Sobic001G402050--Sobic007G197800 Sobic001G402050--Sobic006G067800 Sobic001G016400 Sobic001G016400 Sobic001G402050--Sobic001G016400 Sobic001G402050--Sobic009G215200 Sobic001G402050--Sobic001G130301 Sobic001G493001 Sobic001G493001 Sobic001G402050--Sobic001G493001 Sobic004G211833 Sobic004G211833 Sobic006G083500--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic006G083500--Sobic010G012500 Sobic003G215700 Sobic003G215700 Sobic006G083500--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic006G083500--Sobic002G418400 Sobic009G176000 Sobic009G176000 Sobic006G083500--Sobic009G176000 Sobic002G398901 Sobic002G398901 Sobic006G083500--Sobic002G398901 Sobic003G209000 Sobic003G209000 Sobic006G083500--Sobic003G209000 Sobic007G051000 Sobic007G051000 Sobic006G083500--Sobic007G051000 Sobic001G134400 Sobic001G134400 Sobic006G083500--Sobic001G134400 Sobic005G011300 Sobic005G011300 Sobic004G171400--Sobic005G011300 Sobic003G393900 Sobic003G393900 Sobic004G171400--Sobic003G393900 Sobic004G141200 Sobic004G141200 Sobic004G171400--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic004G171400--Sobic001G140900 Sobic004G100700 Sobic004G100700 Sobic004G171400--Sobic004G100700 Sobic003G228900 Sobic003G228900 Sobic004G171400--Sobic003G228900 Sobic001G459800 Sobic001G459800 Sobic004G171400--Sobic001G459800 Sobic002G188900 Sobic002G188900 Sobic004G171400--Sobic002G188900 Sobic003G369100 Sobic003G369100 Sobic004G171400--Sobic003G369100 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic001G018900 Sobic001G018900 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic001G403500 Sobic001G403500 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700 Sobic007G184600--Sobic002G200600 Sobic007G184600--Sobic001G374700 Sobic007G184600--Sobic001G402050 Sobic007G184600--Sobic002G081600 Sobic007G184600--Sobic001G493001 Sobic001G177800 Sobic001G177800 Sobic007G184600--Sobic001G177800 Sobic007G184600--Sobic006G067800 Sobic003G322400 Sobic003G322400 Sobic007G184600--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic007G184600--Sobic003G346600 Sobic010G063801--Sobic002G081600 Sobic010G063801--Sobic002G200600 Sobic010G063801--Sobic006G116700 Sobic010G063801--Sobic010G251600 Sobic010G063801--Sobic001G130301 Sobic010G063801--Sobic003G436700 Sobic009G105700 Sobic009G105700 Sobic010G063801--Sobic009G105700 Sobic010G063801--Sobic009G215200 Sobic010G063801--Sobic001G374700
Octagon: transcription factors


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