Gene annotation
Transcriptome id Sobic.003G189000.2
Synonym RAB1C, ATRABD2C, ATRAB1C, Sb03g025350
Functional annotation ras-related protein, putative, expressed
UniProt C5XNL6
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF525
NCBI CDD KOG0084; GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins
KEGG Orthology K07874; Ras-related protein Rab-1A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G17530 : RAB GTPase homolog 1C
RAP-DB (Rice) LOC_Os01g37800.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a038343
Brachypodium KQJ85531 , KQK08318
Barley HORVU3Hr1G048090.4 , HORVU3Hr1G048090.2 , HORVU3Hr1G048090.3 , HORVU3Hr1G048090.1 , HORVU1Hr1G001910.6 , HORVU1Hr1G001910.7 , HORVU1Hr1G001910.4 , HORVU1Hr1G001910.5 , HORVU1Hr1G001910.2 , HORVU1Hr1G001910.3 , HORVU1Hr1G001910.1 , HORVU1Hr1G001910.8 , HORVU1Hr1G001910.9 , HORVU3Hr1G010780.6 , HORVU3Hr1G010780.5 , HORVU3Hr1G010780.4 , HORVU3Hr1G010780.3 , HORVU3Hr1G010780.2 , HORVU3Hr1G010780.1
Wheat TraesCS3A02G056700 , TraesCS1A02G015300 , TraesCS3D02G206600 , TraesCS3B02G230700 , TraesCS3B02G230700 , TraesCS3A02G056500 , TraesCS1D02G013200 , TraesCS1B02G019100 , TraesCS1B02G019100 , TraesCS3A02G203100
Populus -


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cDNA sequences
Sobic.003G189000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G159500 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
2 Sobic.002G084500 expressed protein -
3 Sobic.009G164500 clathrin adaptor complex small chain domain containing protein, expressed -
4 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -
5 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
6 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
7 Sobic.001G233532 - K10576: UBE2H, ubiquitin-conjugating enzyme E2 H
8 Sobic.001G408900 OsPDIL5-1 protein disulfide isomerase PDIL5-1, expressed -
9 Sobic.008G097401 - -
10 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
12 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
13 Sobic.001G433700 chorismate synthase 2, chloroplast precursor, putative, expressed K01736: chorismate synthase
14 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
15 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
16 Sobic.004G276100 expressed protein -
17 Sobic.003G104700 Rer1 protein, putative, expressed -
18 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
19 Sobic.002G196350 - K14011: UBXN6, UBX domain-containing protein 6
20 Sobic.006G141500 expressed protein -


Gene co-expression network
sample Sobic003G189000 Sobic003G189000 Sobic002G159500 Sobic002G159500 Sobic003G189000--Sobic002G159500 Sobic002G084500 Sobic002G084500 Sobic003G189000--Sobic002G084500 Sobic009G164500 Sobic009G164500 Sobic003G189000--Sobic009G164500 Sobic010G121300 Sobic010G121300 Sobic003G189000--Sobic010G121300 Sobic004G339200 Sobic004G339200 Sobic003G189000--Sobic004G339200 Sobic009G146100 Sobic009G146100 Sobic003G189000--Sobic009G146100 Sobic001G233532 Sobic001G233532 Sobic003G189000--Sobic001G233532 Sobic001G408900 Sobic001G408900 Sobic003G189000--Sobic001G408900 Sobic008G097401 Sobic008G097401 Sobic003G189000--Sobic008G097401 Sobic002G159500--Sobic003G189000 Sobic002G376500 Sobic002G376500 Sobic002G159500--Sobic002G376500 Sobic002G222900 Sobic002G222900 Sobic002G159500--Sobic002G222900 Sobic003G104700 Sobic003G104700 Sobic002G159500--Sobic003G104700 Sobic004G130100 Sobic004G130100 Sobic002G159500--Sobic004G130100 Sobic002G196350 Sobic002G196350 Sobic002G159500--Sobic002G196350 Sobic006G141500 Sobic006G141500 Sobic002G159500--Sobic006G141500 Sobic007G096700 Sobic007G096700 Sobic002G159500--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic002G159500--Sobic001G501200 Sobic002G084500--Sobic001G408900 Sobic001G433700 Sobic001G433700 Sobic002G084500--Sobic001G433700 Sobic001G331900 Sobic001G331900 Sobic002G084500--Sobic001G331900 Sobic004G284500 Sobic004G284500 Sobic002G084500--Sobic004G284500 Sobic002G419100 Sobic002G419100 Sobic002G084500--Sobic002G419100 Sobic002G153500 Sobic002G153500 Sobic002G084500--Sobic002G153500 Sobic002G084500--Sobic006G141500 Sobic008G189300 Sobic008G189300 Sobic002G084500--Sobic008G189300 Sobic002G084500--Sobic009G146100 Sobic009G164500--Sobic002G376500 Sobic009G164500--Sobic003G189000 Sobic009G164500--Sobic001G408900 Sobic009G164500--Sobic001G433700 Sobic009G164500--Sobic002G084500 Sobic009G164500--Sobic002G159500 Sobic009G164500--Sobic006G141500 Sobic002G296300 Sobic002G296300 Sobic009G164500--Sobic002G296300 Sobic009G077400 Sobic009G077400 Sobic009G164500--Sobic009G077400 Sobic009G178100 Sobic009G178100 Sobic010G121300--Sobic009G178100 Sobic002G155500 Sobic002G155500 Sobic010G121300--Sobic002G155500 Sobic004G225500 Sobic004G225500 Sobic010G121300--Sobic004G225500 Sobic010G121300--Sobic006G141500 Sobic003G253000 Sobic003G253000 Sobic010G121300--Sobic003G253000 Sobic009G185800 Sobic009G185800 Sobic010G121300--Sobic009G185800 Sobic001G415500 Sobic001G415500 Sobic010G121300--Sobic001G415500 Sobic004G300900 Sobic004G300900 Sobic010G121300--Sobic004G300900 Sobic010G121300--Sobic009G146100 Sobic001G078500 Sobic001G078500 Sobic004G339200--Sobic001G078500 Sobic002G400000 Sobic002G400000 Sobic004G339200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic004G339200--Sobic010G168600 Sobic009G171700 Sobic009G171700 Sobic004G339200--Sobic009G171700 Sobic003G007500 Sobic003G007500 Sobic004G339200--Sobic003G007500 Sobic009G198500 Sobic009G198500 Sobic004G339200--Sobic009G198500 Sobic001G433400 Sobic001G433400 Sobic004G339200--Sobic001G433400 Sobic001G439600 Sobic001G439600 Sobic004G339200--Sobic001G439600 Sobic007G186300 Sobic007G186300 Sobic004G339200--Sobic007G186300 Sobic010G253800 Sobic010G253800 Sobic009G146100--Sobic010G253800 Sobic009G146100--Sobic003G253000 Sobic009G146100--Sobic001G415500 Sobic009G146100--Sobic001G433400 Sobic009G135600 Sobic009G135600 Sobic009G146100--Sobic009G135600 Sobic008G161800 Sobic008G161800 Sobic009G146100--Sobic008G161800 Sobic009G146100--Sobic007G186300 Sobic001G461900 Sobic001G461900 Sobic009G146100--Sobic001G461900 Sobic007G045600 Sobic007G045600 Sobic009G146100--Sobic007G045600 Sobic001G233532--Sobic001G408900 Sobic001G058100 Sobic001G058100 Sobic001G233532--Sobic001G058100 Sobic001G233532--Sobic007G096700 Sobic004G276100 Sobic004G276100 Sobic001G233532--Sobic004G276100 Sobic001G289400 Sobic001G289400 Sobic001G233532--Sobic001G289400 Sobic001G233532--Sobic002G159500 Sobic007G078100 Sobic007G078100 Sobic001G233532--Sobic007G078100 Sobic003G398300 Sobic003G398300 Sobic001G233532--Sobic003G398300 Sobic008G179500 Sobic008G179500 Sobic001G233532--Sobic008G179500 Sobic001G408900--Sobic002G084500 Sobic001G408900--Sobic001G233532 Sobic001G408900--Sobic001G058100 Sobic001G408900--Sobic007G096700 Sobic001G408900--Sobic002G419100 Sobic001G408900--Sobic002G159500 Sobic006G281800 Sobic006G281800 Sobic001G408900--Sobic006G281800 Sobic010G042100 Sobic010G042100 Sobic001G408900--Sobic010G042100 Sobic001G408900--Sobic004G276100 Sobic008G097401--Sobic002G296300 Sobic008G097401--Sobic009G198500 Sobic008G097401--Sobic001G078500 Sobic008G097401--Sobic010G121300 Sobic008G097401--Sobic004G339200 Sobic001G403700 Sobic001G403700 Sobic008G097401--Sobic001G403700 Sobic008G097401--Sobic004G300900 Sobic002G078400 Sobic002G078400 Sobic008G097401--Sobic002G078400 Sobic003G124800 Sobic003G124800 Sobic008G097401--Sobic003G124800
Octagon: transcription factors


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