Gene annotation
Transcriptome id Sobic.001G433700.1
Synonym EMB1144, Sb01g040790
Functional annotation chorismate synthase 2, chloroplast precursor, putative, expressed
UniProt C5WQV1
Pfam PF01264
Panther DB PTHR21085
NCBI CDD -
KEGG Orthology K01736; chorismate synthase
Gene Ontology GO:0009073; aromatic amino acid family biosynthetic process GO:0004107chorismate synthase activity


Orthologs (automatic annotation)
TAIR AT1G48850 : chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative
RAP-DB (Rice) LOC_Os03g14990.1 : chorismate synthase 2, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a001628
Brachypodium KQK22520
Barley HORVU0Hr1G008740.1 , HORVU0Hr1G008740.3 , HORVU0Hr1G008740.2
Wheat TraesCS4B02G220800 , TraesCS4D02G221100 , TraesCS4A02G083400 , TraesCS4A02G083400
Populus -


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cDNA sequences
Sobic.001G433700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
2 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
3 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
4 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
5 Sobic.002G084500 expressed protein -
6 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
7 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
8 Sobic.001G132100 expressed protein -
9 Sobic.010G154700 - -
10 Sobic.007G088000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
11 Sobic.006G141500 expressed protein -
12 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
13 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
14 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
15 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
16 Sobic.001G459200 MYB family transcription factor, putative, expressed -
17 Sobic.002G376500 OsCML8 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
18 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
19 Sobic.003G104700 Rer1 protein, putative, expressed -
20 Sobic.006G264300 GA18008-PA, putative, expressed -


Gene co-expression network
sample Sobic001G433700 Sobic001G433700 Sobic009G149400 Sobic009G149400 Sobic001G433700--Sobic009G149400 Sobic001G018800 Sobic001G018800 Sobic001G433700--Sobic001G018800 Sobic002G187500 Sobic002G187500 Sobic001G433700--Sobic002G187500 Sobic010G023800 Sobic010G023800 Sobic001G433700--Sobic010G023800 Sobic002G084500 Sobic002G084500 Sobic001G433700--Sobic002G084500 Sobic001G224400 Sobic001G224400 Sobic001G433700--Sobic001G224400 Sobic004G272800 Sobic004G272800 Sobic001G433700--Sobic004G272800 Sobic001G132100 Sobic001G132100 Sobic001G433700--Sobic001G132100 Sobic010G154700 Sobic010G154700 Sobic001G433700--Sobic010G154700 Sobic009G149400--Sobic002G187500 Sobic001G281400 Sobic001G281400 Sobic009G149400--Sobic001G281400 Sobic003G285800 Sobic003G285800 Sobic009G149400--Sobic003G285800 Sobic002G267500 Sobic002G267500 Sobic009G149400--Sobic002G267500 Sobic009G149400--Sobic004G272800 Sobic009G149400--Sobic010G023800 Sobic009G149400--Sobic001G433700 Sobic004G284500 Sobic004G284500 Sobic009G149400--Sobic004G284500 Sobic007G171000 Sobic007G171000 Sobic009G149400--Sobic007G171000 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic002G187500--Sobic003G285800 Sobic002G190900 Sobic002G190900 Sobic002G187500--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G060500 Sobic010G060500 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic001G459900 Sobic001G459900 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic010G023800--Sobic002G187500 Sobic001G505500 Sobic001G505500 Sobic010G023800--Sobic001G505500 Sobic001G408900 Sobic001G408900 Sobic002G084500--Sobic001G408900 Sobic002G084500--Sobic001G433700 Sobic001G331900 Sobic001G331900 Sobic002G084500--Sobic001G331900 Sobic002G084500--Sobic004G284500 Sobic002G419100 Sobic002G419100 Sobic002G084500--Sobic002G419100 Sobic002G153500 Sobic002G153500 Sobic002G084500--Sobic002G153500 Sobic006G141500 Sobic006G141500 Sobic002G084500--Sobic006G141500 Sobic008G189300 Sobic008G189300 Sobic002G084500--Sobic008G189300 Sobic009G146100 Sobic009G146100 Sobic002G084500--Sobic009G146100 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic001G224400--Sobic002G153500 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic003G253000 Sobic003G253000 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic001G132100--Sobic001G048832 Sobic001G132100--Sobic010G154700 Sobic001G132100--Sobic002G190900 Sobic001G132100--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic001G132100--Sobic007G051000 Sobic002G398901 Sobic002G398901 Sobic001G132100--Sobic002G398901 Sobic009G119900 Sobic009G119900 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800 Sobic010G154700--Sobic001G048832 Sobic010G154700--Sobic001G132100 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic010G154700--Sobic003G155400 Sobic010G154700--Sobic009G119900 Sobic010G154700--Sobic002G190900 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000
Octagon: transcription factors


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