Gene annotation
Transcriptome id Sobic.001G233532.1
Synonym -
Functional annotation -
UniProt A0A1Z5S6Z7
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF141
NCBI CDD KOG0416; Ubiquitin-protein ligase
KEGG Orthology K10576; UBE2H, ubiquitin-conjugating enzyme E2 H
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63800 : ubiquitin-conjugating enzyme 5
RAP-DB (Rice) LOC_Os10g31000.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a006748 , Zm00025a017701 , Zm00025a000657 , Zm00025a053417
Brachypodium KQJ96917 , KQJ96916 , KQJ96914 , KQK23650
Barley HORVU1Hr1G037800.3 , HORVU1Hr1G037800.2 , HORVU1Hr1G037800.5 , HORVU1Hr1G037800.4 , HORVU1Hr1G037800.7 , HORVU1Hr1G037800.6 , HORVU1Hr1G037800.9 , HORVU1Hr1G037800.8 , HORVU4Hr1G080050.5 , HORVU4Hr1G080050.1 , HORVU4Hr1G080050.3 , HORVU2Hr1G030300.1
Wheat TraesCS1D02G141600 , TraesCS1D02G141600 , TraesCS1D02G141600 , TraesCS1B02G159100 , TraesCS1B02G159100 , TraesCS1A02G142600 , TraesCS1A02G142600 , TraesCS1A02G142600 , TraesCS1A02G142600 , TraesCS1A02G142600 , TraesCS4B02G314900 , TraesCS4A02G414200 , TraesCS4D02G312000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G408900 OsPDIL5-1 protein disulfide isomerase PDIL5-1, expressed -
2 Sobic.001G058100 thioredoxin, putative, expressed -
3 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
4 Sobic.004G276100 expressed protein -
5 Sobic.001G289400 expressed protein -
6 Sobic.002G159500 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
7 Sobic.007G078100 UPF0041 domain containing protein, putative, expressed -
8 Sobic.003G398300 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
9 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
10 Sobic.006G220900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
11 Sobic.003G189000 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
12 Sobic.008G097401 - -
13 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
14 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
15 Sobic.004G204900 glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
16 Sobic.001G132100 expressed protein -
17 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
18 Sobic.010G154700 - -
19 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
20 Sobic.009G122100 tetratricopeptide repeat containing protein, putative, expressed K17969: FIS1, TTC11, mitochondrial fission 1 protein


Gene co-expression network
sample Sobic001G233532 Sobic001G233532 Sobic001G408900 Sobic001G408900 Sobic001G233532--Sobic001G408900 Sobic001G058100 Sobic001G058100 Sobic001G233532--Sobic001G058100 Sobic007G096700 Sobic007G096700 Sobic001G233532--Sobic007G096700 Sobic004G276100 Sobic004G276100 Sobic001G233532--Sobic004G276100 Sobic001G289400 Sobic001G289400 Sobic001G233532--Sobic001G289400 Sobic002G159500 Sobic002G159500 Sobic001G233532--Sobic002G159500 Sobic007G078100 Sobic007G078100 Sobic001G233532--Sobic007G078100 Sobic003G398300 Sobic003G398300 Sobic001G233532--Sobic003G398300 Sobic008G179500 Sobic008G179500 Sobic001G233532--Sobic008G179500 Sobic002G084500 Sobic002G084500 Sobic001G408900--Sobic002G084500 Sobic001G408900--Sobic001G233532 Sobic001G408900--Sobic001G058100 Sobic001G408900--Sobic007G096700 Sobic002G419100 Sobic002G419100 Sobic001G408900--Sobic002G419100 Sobic001G408900--Sobic002G159500 Sobic006G281800 Sobic006G281800 Sobic001G408900--Sobic006G281800 Sobic010G042100 Sobic010G042100 Sobic001G408900--Sobic010G042100 Sobic001G408900--Sobic004G276100 Sobic001G236300 Sobic001G236300 Sobic001G058100--Sobic001G236300 Sobic004G335000 Sobic004G335000 Sobic001G058100--Sobic004G335000 Sobic002G257400 Sobic002G257400 Sobic001G058100--Sobic002G257400 Sobic006G252200 Sobic006G252200 Sobic001G058100--Sobic006G252200 Sobic010G044200 Sobic010G044200 Sobic001G058100--Sobic010G044200 Sobic001G058100--Sobic001G289400 Sobic003G104700 Sobic003G104700 Sobic001G058100--Sobic003G104700 Sobic006G220900 Sobic006G220900 Sobic001G058100--Sobic006G220900 Sobic002G083266 Sobic002G083266 Sobic001G058100--Sobic002G083266 Sobic009G198500 Sobic009G198500 Sobic007G096700--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic001G501200 Sobic001G501200 Sobic007G096700--Sobic001G501200 Sobic001G005900 Sobic001G005900 Sobic007G096700--Sobic001G005900 Sobic002G400000 Sobic002G400000 Sobic007G096700--Sobic002G400000 Sobic004G130900 Sobic004G130900 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic004G300900 Sobic004G300900 Sobic007G096700--Sobic004G300900 Sobic004G276100--Sobic008G179500 Sobic004G272800 Sobic004G272800 Sobic004G276100--Sobic004G272800 Sobic004G276100--Sobic007G078100 Sobic009G111600 Sobic009G111600 Sobic004G276100--Sobic009G111600 Sobic002G329100 Sobic002G329100 Sobic004G276100--Sobic002G329100 Sobic004G050000 Sobic004G050000 Sobic004G276100--Sobic004G050000 Sobic006G108400 Sobic006G108400 Sobic004G276100--Sobic006G108400 Sobic009G043600 Sobic009G043600 Sobic004G276100--Sobic009G043600 Sobic004G284500 Sobic004G284500 Sobic004G276100--Sobic004G284500 Sobic001G289400--Sobic001G058100 Sobic001G289400--Sobic006G220900 Sobic010G168200 Sobic010G168200 Sobic001G289400--Sobic010G168200 Sobic001G289400--Sobic001G233532 Sobic001G010700 Sobic001G010700 Sobic001G289400--Sobic001G010700 Sobic004G204800 Sobic004G204800 Sobic001G289400--Sobic004G204800 Sobic009G077400 Sobic009G077400 Sobic001G289400--Sobic009G077400 Sobic001G289400--Sobic007G096700 Sobic003G043400 Sobic003G043400 Sobic001G289400--Sobic003G043400 Sobic003G189000 Sobic003G189000 Sobic002G159500--Sobic003G189000 Sobic002G376500 Sobic002G376500 Sobic002G159500--Sobic002G376500 Sobic002G222900 Sobic002G222900 Sobic002G159500--Sobic002G222900 Sobic002G159500--Sobic003G104700 Sobic004G130100 Sobic004G130100 Sobic002G159500--Sobic004G130100 Sobic002G196350 Sobic002G196350 Sobic002G159500--Sobic002G196350 Sobic006G141500 Sobic006G141500 Sobic002G159500--Sobic006G141500 Sobic002G159500--Sobic007G096700 Sobic002G159500--Sobic001G501200 Sobic007G078100--Sobic004G276100 Sobic002G257300 Sobic002G257300 Sobic007G078100--Sobic002G257300 Sobic007G161400 Sobic007G161400 Sobic007G078100--Sobic007G161400 Sobic010G154700 Sobic010G154700 Sobic007G078100--Sobic010G154700 Sobic007G078100--Sobic004G272800 Sobic004G051700 Sobic004G051700 Sobic007G078100--Sobic004G051700 Sobic005G188100 Sobic005G188100 Sobic007G078100--Sobic005G188100 Sobic001G132100 Sobic001G132100 Sobic007G078100--Sobic001G132100 Sobic001G048832 Sobic001G048832 Sobic007G078100--Sobic001G048832 Sobic003G398300--Sobic007G096700 Sobic003G323600 Sobic003G323600 Sobic003G398300--Sobic003G323600 Sobic001G459500 Sobic001G459500 Sobic003G398300--Sobic001G459500 Sobic003G124800 Sobic003G124800 Sobic003G398300--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic003G398300--Sobic007G045600 Sobic002G090700 Sobic002G090700 Sobic003G398300--Sobic002G090700 Sobic003G398300--Sobic009G198500 Sobic003G398300--Sobic004G300900 Sobic003G398300--Sobic006G141500 Sobic008G179500--Sobic004G276100 Sobic008G179500--Sobic009G111600 Sobic001G022900 Sobic001G022900 Sobic008G179500--Sobic001G022900 Sobic004G277000 Sobic004G277000 Sobic008G179500--Sobic004G277000 Sobic003G333400 Sobic003G333400 Sobic008G179500--Sobic003G333400 Sobic008G179500--Sobic002G083266 Sobic008G179500--Sobic004G050000 Sobic004G301400 Sobic004G301400 Sobic008G179500--Sobic004G301400 Sobic001G399100 Sobic001G399100 Sobic008G179500--Sobic001G399100
Octagon: transcription factors


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