Gene annotation
Transcriptome id Sobic.001G515100.1
Synonym Sb01g048070, QQT2
Functional annotation ATP binding protein, putative, expressed
UniProt C5WZ18
Pfam PF00009
Panther DB PTHR21231 PTHR21231:SF8
NCBI CDD KOG1532; GTPase XAB1, interacts with DNA repair protein XPA
KEGG Orthology K06883; uncharacterized protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21800 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g19870.1 : ATP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a052540
Brachypodium KQJ91203
Barley HORVU4Hr1G052920.2 , HORVU4Hr1G052920.3 , HORVU4Hr1G052920.1 , HORVU4Hr1G052920.4
Wheat TraesCS4B02G180800 , TraesCS4B02G180800 , TraesCS4A02G123700 , TraesCS4A02G123700 , TraesCS1B02G316800 , TraesCS4D02G182300 , TraesCS4D02G182300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
2 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
3 Sobic.003G184699 - -
4 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
5 Sobic.007G027700 expressed protein -
6 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
7 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
8 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
9 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
10 Sobic.003G057700 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
12 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
13 Sobic.001G029400 RNA-binding motif protein, putative, expressed K13107: RBMX2, RNA-binding motif protein, X-linked 2
14 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
15 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
16 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
17 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
18 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
19 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
20 Sobic.010G028300 bromodomain domain containing protein, expressed -


Gene co-expression network
sample Sobic001G515100 Sobic001G515100 Sobic003G401100 Sobic003G401100 Sobic001G515100--Sobic003G401100 Sobic006G077200 Sobic006G077200 Sobic001G515100--Sobic006G077200 Sobic003G184699 Sobic003G184699 Sobic001G515100--Sobic003G184699 Sobic001G143500 Sobic001G143500 Sobic001G515100--Sobic001G143500 Sobic007G027700 Sobic007G027700 Sobic001G515100--Sobic007G027700 Sobic007G075900 Sobic007G075900 Sobic001G515100--Sobic007G075900 Sobic002G370900 Sobic002G370900 Sobic001G515100--Sobic002G370900 Sobic005G216300 Sobic005G216300 Sobic001G515100--Sobic005G216300 Sobic001G176200 Sobic001G176200 Sobic001G515100--Sobic001G176200 Sobic010G236400 Sobic010G236400 Sobic003G401100--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic003G401100--Sobic007G027700 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic009G084900 Sobic009G084900 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic010G059500 Sobic010G059500 Sobic006G077200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic006G077200--Sobic001G145400 Sobic001G493200 Sobic001G493200 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic004G096400 Sobic004G096400 Sobic006G077200--Sobic004G096400 Sobic008G162900 Sobic008G162900 Sobic003G184699--Sobic008G162900 Sobic008G047800 Sobic008G047800 Sobic003G184699--Sobic008G047800 Sobic005G027400 Sobic005G027400 Sobic003G184699--Sobic005G027400 Sobic009G126400 Sobic009G126400 Sobic003G184699--Sobic009G126400 Sobic010G101800 Sobic010G101800 Sobic003G184699--Sobic010G101800 Sobic007G167500 Sobic007G167500 Sobic003G184699--Sobic007G167500 Sobic003G443100 Sobic003G443100 Sobic003G184699--Sobic003G443100 Sobic001G083400 Sobic001G083400 Sobic003G184699--Sobic001G083400 Sobic002G309600 Sobic002G309600 Sobic003G184699--Sobic002G309600 Sobic006G252700 Sobic006G252700 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G466700 Sobic001G466700 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G143500--Sobic006G267300 Sobic008G127400 Sobic008G127400 Sobic007G027700--Sobic008G127400 Sobic007G027700--Sobic003G401100 Sobic003G412300 Sobic003G412300 Sobic007G027700--Sobic003G412300 Sobic007G027700--Sobic001G143500 Sobic004G325400 Sobic004G325400 Sobic007G027700--Sobic004G325400 Sobic007G027700--Sobic005G216300 Sobic001G395100 Sobic001G395100 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic007G027700--Sobic006G267300 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic001G392300 Sobic001G392300 Sobic007G075900--Sobic001G392300 Sobic009G177500 Sobic009G177500 Sobic007G075900--Sobic009G177500 Sobic009G044800 Sobic009G044800 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic007G075900--Sobic004G274200 Sobic007G075900--Sobic003G401100 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic002G370900--Sobic001G176200 Sobic006G082900 Sobic006G082900 Sobic002G370900--Sobic006G082900 Sobic004G067700 Sobic004G067700 Sobic002G370900--Sobic004G067700 Sobic006G173100 Sobic006G173100 Sobic002G370900--Sobic006G173100 Sobic003G008500 Sobic003G008500 Sobic002G370900--Sobic003G008500 Sobic002G260400 Sobic002G260400 Sobic002G370900--Sobic002G260400 Sobic002G310200 Sobic002G310200 Sobic002G370900--Sobic002G310200 Sobic002G197100 Sobic002G197100 Sobic002G370900--Sobic002G197100 Sobic004G345700 Sobic004G345700 Sobic002G370900--Sobic004G345700 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic005G216300--Sobic007G027700 Sobic004G039600 Sobic004G039600 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic001G090400 Sobic001G090400 Sobic001G176200--Sobic001G090400 Sobic001G176200--Sobic002G370900 Sobic001G176200--Sobic002G197100 Sobic005G154500 Sobic005G154500 Sobic001G176200--Sobic005G154500 Sobic005G015900 Sobic005G015900 Sobic001G176200--Sobic005G015900 Sobic001G176200--Sobic004G345700 Sobic001G176200--Sobic006G173100 Sobic010G245000 Sobic010G245000 Sobic001G176200--Sobic010G245000 Sobic002G320500 Sobic002G320500 Sobic001G176200--Sobic002G320500
Octagon: transcription factors


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