Gene annotation
Transcriptome id Sobic.003G057700.1
Synonym Sb03g004920
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XNK4
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF412
NCBI CDD KOG0296; Angio-associated migratory cell protein (contains WD40 repeats)
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G45760 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g10790.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022998
Brachypodium PNT70136 , KQK03231 , KQK03230
Barley HORVU3Hr1G026100.12 , HORVU3Hr1G026100.13 , HORVU3Hr1G026100.10 , HORVU3Hr1G026100.11 , HORVU3Hr1G026100.14 , HORVU3Hr1G026100.15 , HORVU3Hr1G026100.1 , HORVU3Hr1G026100.2 , HORVU3Hr1G026100.3 , HORVU3Hr1G026100.4 , HORVU3Hr1G026100.5 , HORVU3Hr1G026100.6 , HORVU3Hr1G026100.7 , HORVU3Hr1G026100.8 , HORVU3Hr1G026100.9
Wheat TraesCS3A02G137100 , TraesCS3D02G137900 , TraesCS3D02G137900 , TraesCS3B02G155000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
2 Sobic.010G147833 - -
3 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -
4 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
5 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
6 Sobic.007G132100 myrosinase precursor, putative, expressed -
7 Sobic.001G276200 ACI13, putative, expressed -
8 Sobic.001G515100 ATP binding protein, putative, expressed K06883: uncharacterized protein
9 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
10 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
11 Sobic.001G214600 expressed protein -
12 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
13 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
14 Sobic.001G384400 glucosyltransferase, putative, expressed K03848: alpha-1,3-glucosyltransferase
15 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
16 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
18 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
19 Sobic.009G084900 expressed protein -
20 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10


Gene co-expression network
sample Sobic003G057700 Sobic003G057700 Sobic007G120500 Sobic007G120500 Sobic003G057700--Sobic007G120500 Sobic010G147833 Sobic010G147833 Sobic003G057700--Sobic010G147833 Sobic003G249600 Sobic003G249600 Sobic003G057700--Sobic003G249600 Sobic001G145400 Sobic001G145400 Sobic003G057700--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G057700--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic003G057700--Sobic007G132100 Sobic001G276200 Sobic001G276200 Sobic003G057700--Sobic001G276200 Sobic001G515100 Sobic001G515100 Sobic003G057700--Sobic001G515100 Sobic001G493200 Sobic001G493200 Sobic003G057700--Sobic001G493200 Sobic001G369000 Sobic001G369000 Sobic007G120500--Sobic001G369000 Sobic004G039600 Sobic004G039600 Sobic007G120500--Sobic004G039600 Sobic007G120500--Sobic007G132100 Sobic006G012500 Sobic006G012500 Sobic007G120500--Sobic006G012500 Sobic007G120500--Sobic003G057700 Sobic007G120500--Sobic003G249600 Sobic004G072100 Sobic004G072100 Sobic007G120500--Sobic004G072100 Sobic010G053800 Sobic010G053800 Sobic007G120500--Sobic010G053800 Sobic003G394200 Sobic003G394200 Sobic007G120500--Sobic003G394200 Sobic001G214600 Sobic001G214600 Sobic010G147833--Sobic001G214600 Sobic004G260100 Sobic004G260100 Sobic010G147833--Sobic004G260100 Sobic001G170100 Sobic001G170100 Sobic010G147833--Sobic001G170100 Sobic007G019300 Sobic007G019300 Sobic010G147833--Sobic007G019300 Sobic001G426600 Sobic001G426600 Sobic010G147833--Sobic001G426600 Sobic010G147833--Sobic003G057700 Sobic010G147833--Sobic003G249600 Sobic010G147833--Sobic007G120500 Sobic001G287500 Sobic001G287500 Sobic010G147833--Sobic001G287500 Sobic003G249600--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic003G249600--Sobic004G096400 Sobic003G249600--Sobic007G120500 Sobic003G249600--Sobic007G132100 Sobic003G126600 Sobic003G126600 Sobic003G249600--Sobic003G126600 Sobic003G249600--Sobic004G072100 Sobic004G322400 Sobic004G322400 Sobic003G249600--Sobic004G322400 Sobic008G124800 Sobic008G124800 Sobic003G249600--Sobic008G124800 Sobic003G249600--Sobic004G039600 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic006G077200--Sobic010G059500 Sobic006G077200--Sobic001G145400 Sobic006G077200--Sobic001G493200 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic006G077200--Sobic004G096400 Sobic007G218000 Sobic007G218000 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic006G131000 Sobic006G131000 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic009G044800 Sobic009G044800 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic001G276200--Sobic006G077200 Sobic001G449900 Sobic001G449900 Sobic001G276200--Sobic001G449900 Sobic001G276200--Sobic001G493200 Sobic001G276200--Sobic003G249600 Sobic001G276200--Sobic004G096400 Sobic006G207200 Sobic006G207200 Sobic001G276200--Sobic006G207200 Sobic001G276200--Sobic003G405500 Sobic001G276200--Sobic003G057700 Sobic007G097400 Sobic007G097400 Sobic001G276200--Sobic007G097400 Sobic003G401100 Sobic003G401100 Sobic001G515100--Sobic003G401100 Sobic001G515100--Sobic006G077200 Sobic003G184699 Sobic003G184699 Sobic001G515100--Sobic003G184699 Sobic001G143500 Sobic001G143500 Sobic001G515100--Sobic001G143500 Sobic007G027700 Sobic007G027700 Sobic001G515100--Sobic007G027700 Sobic007G075900 Sobic007G075900 Sobic001G515100--Sobic007G075900 Sobic002G370900 Sobic002G370900 Sobic001G515100--Sobic002G370900 Sobic005G216300 Sobic005G216300 Sobic001G515100--Sobic005G216300 Sobic001G176200 Sobic001G176200 Sobic001G515100--Sobic001G176200 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic001G493200--Sobic004G072100 Sobic001G493200--Sobic004G096400 Sobic001G493200--Sobic007G132100 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600
Octagon: transcription factors


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