Gene annotation
Transcriptome id Sobic.003G249600.1
Synonym VCL1, MAN, Sb03g030590, EMB258
Functional annotation vacuolar protein sorting-associated protein 16, putative, expressed
UniProt A0A1B6Q567
Pfam PF04841 PF04840
Panther DB PTHR12811 PTHR12811:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005737cytoplasm GO:0007033vacuole organization


Orthologs (automatic annotation)
TAIR AT2G38020 : vacuoleless1 (VCL1)
RAP-DB (Rice) LOC_Os01g47650.1 : vacuolar protein sorting-associated protein 16, putative, expressed
MaizeGDB (Corn) Zm00025a038752
Brachypodium KQK09090
Barley HORVU3Hr1G060780.4 , HORVU3Hr1G060780.6 , HORVU3Hr1G060780.7 , HORVU3Hr1G060780.1 , HORVU3Hr1G060780.2 , HORVU3Hr1G060780.3 , HORVU3Hr1G060780.8
Wheat TraesCS3A02G247800 , TraesCS3B02G271600 , TraesCS3D02G243600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
2 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
3 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
4 Sobic.007G132100 myrosinase precursor, putative, expressed -
5 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
6 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
7 Sobic.004G322400 WD40-like, putative, expressed -
8 Sobic.008G124800 expressed protein -
9 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
10 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
11 Sobic.009G084900 expressed protein -
12 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
13 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
14 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
15 Sobic.010G147833 - -
16 Sobic.001G347500 expressed protein -
17 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
19 Sobic.010G000800 PHD-finger domain containing protein, expressed -
20 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -


Gene co-expression network
sample Sobic003G249600 Sobic003G249600 Sobic006G077200 Sobic006G077200 Sobic003G249600--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic003G249600--Sobic004G096400 Sobic007G120500 Sobic007G120500 Sobic003G249600--Sobic007G120500 Sobic007G132100 Sobic007G132100 Sobic003G249600--Sobic007G132100 Sobic003G126600 Sobic003G126600 Sobic003G249600--Sobic003G126600 Sobic004G072100 Sobic004G072100 Sobic003G249600--Sobic004G072100 Sobic004G322400 Sobic004G322400 Sobic003G249600--Sobic004G322400 Sobic008G124800 Sobic008G124800 Sobic003G249600--Sobic008G124800 Sobic004G039600 Sobic004G039600 Sobic003G249600--Sobic004G039600 Sobic009G084900 Sobic009G084900 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic010G059500 Sobic010G059500 Sobic006G077200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic006G077200--Sobic001G145400 Sobic001G493200 Sobic001G493200 Sobic006G077200--Sobic001G493200 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic006G077200--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic004G096400--Sobic010G059500 Sobic004G096400--Sobic001G493200 Sobic004G096400--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic004G096400--Sobic001G433800 Sobic004G096400--Sobic003G249600 Sobic004G096400--Sobic006G077200 Sobic004G096400--Sobic007G132100 Sobic001G369000 Sobic001G369000 Sobic007G120500--Sobic001G369000 Sobic007G120500--Sobic004G039600 Sobic007G120500--Sobic007G132100 Sobic006G012500 Sobic006G012500 Sobic007G120500--Sobic006G012500 Sobic003G057700 Sobic003G057700 Sobic007G120500--Sobic003G057700 Sobic007G120500--Sobic003G249600 Sobic007G120500--Sobic004G072100 Sobic010G053800 Sobic010G053800 Sobic007G120500--Sobic010G053800 Sobic003G394200 Sobic003G394200 Sobic007G120500--Sobic003G394200 Sobic007G218000 Sobic007G218000 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic006G131000 Sobic006G131000 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic009G044800 Sobic009G044800 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic003G126600--Sobic004G039600 Sobic003G126600--Sobic003G249600 Sobic009G229600 Sobic009G229600 Sobic003G126600--Sobic009G229600 Sobic003G187500 Sobic003G187500 Sobic003G126600--Sobic003G187500 Sobic003G126600--Sobic010G053800 Sobic001G518400 Sobic001G518400 Sobic003G126600--Sobic001G518400 Sobic003G126600--Sobic001G369000 Sobic003G187200 Sobic003G187200 Sobic003G126600--Sobic003G187200 Sobic003G126600--Sobic004G072100 Sobic004G072100--Sobic007G218000 Sobic004G072100--Sobic010G053800 Sobic010G275500 Sobic010G275500 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic010G069100 Sobic010G069100 Sobic004G072100--Sobic010G069100 Sobic010G116600 Sobic010G116600 Sobic004G072100--Sobic010G116600 Sobic008G047800 Sobic008G047800 Sobic004G072100--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic004G072100--Sobic001G155000 Sobic002G401500 Sobic002G401500 Sobic004G322400--Sobic002G401500 Sobic002G042600 Sobic002G042600 Sobic004G322400--Sobic002G042600 Sobic009G131300 Sobic009G131300 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic004G322400--Sobic008G124800 Sobic002G179400 Sobic002G179400 Sobic004G322400--Sobic002G179400 Sobic004G322400--Sobic010G059500 Sobic001G065100 Sobic001G065100 Sobic004G322400--Sobic001G065100 Sobic004G322400--Sobic010G275500 Sobic002G340900 Sobic002G340900 Sobic008G124800--Sobic002G340900 Sobic006G021700 Sobic006G021700 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic008G124800--Sobic002G401500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic004G039600--Sobic007G120500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.