Gene annotation
Transcriptome id Sobic.009G041600.1,Sobic.009G041600.2
Synonym Sb09g003490
Functional annotation CRS1/YhbY domain containing protein, putative, expressed
UniProt C6JSC5 , C5Z007 , C5Z001
Pfam PF01985
Panther DB PTHR31426 PTHR31426:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G27550 : RNA-binding CRS1 / YhbY (CRM) domain protein
RAP-DB (Rice) LOC_Os05g05300.1 : CRS1/YhbY domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a055389 , Zm00025a038093
Brachypodium KQK07573
Barley HORVU1Hr1G019580.8 , HORVU1Hr1G019580.2 , HORVU1Hr1G019580.3 , HORVU1Hr1G019580.4 , HORVU1Hr1G019580.5 , HORVU1Hr1G019580.6 , HORVU1Hr1G019580.7
Wheat TraesCS1B02G108100 , TraesCS1A02G108800 , TraesCS1D02G090300
Populus -


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cDNA sequences
Sobic.009G041600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
2 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -
3 Sobic.007G053700 MYB family transcription factor, putative, expressed -
4 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
5 Sobic.001G049800 DDT domain containing protein, putative, expressed -
6 Sobic.007G077700 expressed protein -
7 Sobic.004G098000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
9 Sobic.007G145100 SGT1 protein, putative, expressed -
10 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
11 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
12 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
13 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
14 Sobic.001G415200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plant-specific domain TIGR01589 family protein, expressed -
15 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
16 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
17 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
18 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
19 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
20 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1


Gene co-expression network
sample Sobic009G041600 Sobic009G041600 Sobic007G059700 Sobic007G059700 Sobic009G041600--Sobic007G059700 Sobic001G008000 Sobic001G008000 Sobic009G041600--Sobic001G008000 Sobic007G053700 Sobic007G053700 Sobic009G041600--Sobic007G053700 Sobic001G173800 Sobic001G173800 Sobic009G041600--Sobic001G173800 Sobic001G049800 Sobic001G049800 Sobic009G041600--Sobic001G049800 Sobic007G077700 Sobic007G077700 Sobic009G041600--Sobic007G077700 Sobic004G098000 Sobic004G098000 Sobic009G041600--Sobic004G098000 Sobic008G022701 Sobic008G022701 Sobic009G041600--Sobic008G022701 Sobic007G145100 Sobic007G145100 Sobic009G041600--Sobic007G145100 Sobic006G273900 Sobic006G273900 Sobic007G059700--Sobic006G273900 Sobic007G060600 Sobic007G060600 Sobic007G059700--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic007G059700--Sobic004G151000 Sobic007G059700--Sobic001G049800 Sobic004G027300 Sobic004G027300 Sobic007G059700--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic007G059700--Sobic009G191500 Sobic001G453500 Sobic001G453500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200 Sobic001G502600 Sobic001G502600 Sobic001G008000--Sobic001G502600 Sobic010G041000 Sobic010G041000 Sobic001G008000--Sobic010G041000 Sobic001G008000--Sobic007G059700 Sobic001G008000--Sobic008G022701 Sobic001G008000--Sobic006G273900 Sobic010G153300 Sobic010G153300 Sobic001G008000--Sobic010G153300 Sobic001G008000--Sobic007G145100 Sobic001G008000--Sobic004G027300 Sobic004G305100 Sobic004G305100 Sobic001G008000--Sobic004G305100 Sobic002G154400 Sobic002G154400 Sobic007G053700--Sobic002G154400 Sobic003G349000 Sobic003G349000 Sobic007G053700--Sobic003G349000 Sobic009G190200 Sobic009G190200 Sobic007G053700--Sobic009G190200 Sobic003G282700 Sobic003G282700 Sobic007G053700--Sobic003G282700 Sobic009G235200 Sobic009G235200 Sobic007G053700--Sobic009G235200 Sobic005G114101 Sobic005G114101 Sobic007G053700--Sobic005G114101 Sobic002G009800 Sobic002G009800 Sobic007G053700--Sobic002G009800 Sobic002G312800 Sobic002G312800 Sobic007G053700--Sobic002G312800 Sobic002G053200 Sobic002G053200 Sobic007G053700--Sobic002G053200 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G501400 Sobic001G501400 Sobic001G173800--Sobic001G501400 Sobic008G163500 Sobic008G163500 Sobic001G173800--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G173800--Sobic008G049100 Sobic009G173600 Sobic009G173600 Sobic001G173800--Sobic009G173600 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic009G246500 Sobic009G246500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic009G096100 Sobic009G096100 Sobic007G077700--Sobic009G096100 Sobic008G056900 Sobic008G056900 Sobic007G077700--Sobic008G056900 Sobic001G187800 Sobic001G187800 Sobic007G077700--Sobic001G187800 Sobic002G142600 Sobic002G142600 Sobic007G077700--Sobic002G142600 Sobic005G011000 Sobic005G011000 Sobic007G077700--Sobic005G011000 Sobic002G380100 Sobic002G380100 Sobic007G077700--Sobic002G380100 Sobic001G252500 Sobic001G252500 Sobic007G077700--Sobic001G252500 Sobic004G149800 Sobic004G149800 Sobic007G077700--Sobic004G149800 Sobic007G077700--Sobic009G235200 Sobic004G098000--Sobic004G027300 Sobic004G098000--Sobic007G059700 Sobic003G332900 Sobic003G332900 Sobic004G098000--Sobic003G332900 Sobic004G098000--Sobic010G224700 Sobic004G231600 Sobic004G231600 Sobic004G098000--Sobic004G231600 Sobic003G425100 Sobic003G425100 Sobic004G098000--Sobic003G425100 Sobic001G161400 Sobic001G161400 Sobic004G098000--Sobic001G161400 Sobic003G039300 Sobic003G039300 Sobic004G098000--Sobic003G039300 Sobic001G437801 Sobic001G437801 Sobic004G098000--Sobic001G437801 Sobic008G022701--Sobic003G332900 Sobic008G022701--Sobic001G008000 Sobic001G119600 Sobic001G119600 Sobic008G022701--Sobic001G119600 Sobic002G052400 Sobic002G052400 Sobic008G022701--Sobic002G052400 Sobic008G022701--Sobic007G145100 Sobic005G100900 Sobic005G100900 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic008G022701--Sobic001G502600 Sobic008G022701--Sobic004G027300 Sobic002G377800 Sobic002G377800 Sobic007G145100--Sobic002G377800 Sobic001G544500 Sobic001G544500 Sobic007G145100--Sobic001G544500 Sobic010G228700 Sobic010G228700 Sobic007G145100--Sobic010G228700 Sobic002G399200 Sobic002G399200 Sobic007G145100--Sobic002G399200 Sobic007G145100--Sobic002G052400 Sobic007G145100--Sobic005G100900 Sobic001G362300 Sobic001G362300 Sobic007G145100--Sobic001G362300 Sobic007G145100--Sobic001G119600 Sobic007G145100--Sobic008G022701
Octagon: transcription factors


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