Gene annotation
Transcriptome id Sobic.001G415200.1
Synonym Sb01g039100
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
plant-specific domain TIGR01589 family protein, expressed
UniProt C5WPA8
Pfam PF09713
Panther DB PTHR31871 PTHR31871:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G28990 : Plant protein 1589 of unknown function
RAP-DB (Rice) LOC_Os03g17200.1 : plant-specific domain TIGR01589 family protein, expressed
MaizeGDB (Corn) Zm00025a039698
Brachypodium KQK10485 , KQK22287 , PNT77642
Barley HORVU4Hr1G058560.1 , HORVU4Hr1G058560.2 , HORVU4Hr1G058560.3 , HORVU4Hr1G058560.4 , HORVU3Hr1G087010.3 , HORVU3Hr1G087010.2 , HORVU3Hr1G087010.1 , HORVU4Hr1G023250.1
Wheat TraesCS3B02G388300 , TraesCS1B02G296600 , TraesCS4B02G202900 , TraesCS4B02G202900 , TraesCS1A02G287200 , TraesCS3D02G349400 , TraesCS1D02G286100 , TraesCS4D02G203800 , TraesCS4A02G101700
Populus -


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cDNA sequences
Sobic.001G415200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G197000 O-methyltransferase family 2 protein (At)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
2 Sobic.003G406700 expressed protein -
3 Sobic.002G213800 auxin-repressed protein, putative, expressed -
4 Sobic.005G083733 - -
5 Sobic.001G191200 a marker of bud dormancy(PubMedID : 16443694)@auxin-repressed protein, putative, expressed -
6 Sobic.002G331000 OsFBX462 - F-box domain containing protein, expressed -
7 Sobic.004G345900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
8 Sobic.007G144400 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
9 Sobic.007G144400 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
10 Sobic.007G144400 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
11 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
12 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
13 Sobic.005G085200 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
14 Sobic.001G015300 expressed protein -
15 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
16 Sobic.002G051300 flavin-containing monooxygenase family protein, putative, expressed -
17 Sobic.010G057300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
18 Sobic.003G400266 - -
19 Sobic.004G315100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
20 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1


Gene co-expression network
sample Sobic001G415200 Sobic001G415200 Sobic009G197000 Sobic009G197000 Sobic001G415200--Sobic009G197000 Sobic003G406700 Sobic003G406700 Sobic001G415200--Sobic003G406700 Sobic002G213800 Sobic002G213800 Sobic001G415200--Sobic002G213800 Sobic005G083733 Sobic005G083733 Sobic001G415200--Sobic005G083733 Sobic001G191200 Sobic001G191200 Sobic001G415200--Sobic001G191200 Sobic002G331000 Sobic002G331000 Sobic001G415200--Sobic002G331000 Sobic004G345900 Sobic004G345900 Sobic001G415200--Sobic004G345900 Sobic007G144400 Sobic007G144400 Sobic001G415200--Sobic007G144400 Sobic010G143400 Sobic010G143400 Sobic009G197000--Sobic010G143400 Sobic005G085200 Sobic005G085200 Sobic009G197000--Sobic005G085200 Sobic008G013900 Sobic008G013900 Sobic009G197000--Sobic008G013900 Sobic009G197000--Sobic004G345900 Sobic009G197000--Sobic001G191200 Sobic009G197000--Sobic002G331000 Sobic007G131200 Sobic007G131200 Sobic009G197000--Sobic007G131200 Sobic001G141300 Sobic001G141300 Sobic009G197000--Sobic001G141300 Sobic009G197000--Sobic003G406700 Sobic003G406700--Sobic001G191200 Sobic001G377000 Sobic001G377000 Sobic003G406700--Sobic001G377000 Sobic009G154600 Sobic009G154600 Sobic003G406700--Sobic009G154600 Sobic003G107300 Sobic003G107300 Sobic003G406700--Sobic003G107300 Sobic001G423100 Sobic001G423100 Sobic003G406700--Sobic001G423100 Sobic001G225500 Sobic001G225500 Sobic003G406700--Sobic001G225500 Sobic006G279800 Sobic006G279800 Sobic003G406700--Sobic006G279800 Sobic001G031300 Sobic001G031300 Sobic003G406700--Sobic001G031300 Sobic003G406700--Sobic002G331000 Sobic002G213800--Sobic004G345900 Sobic001G277000 Sobic001G277000 Sobic002G213800--Sobic001G277000 Sobic002G213800--Sobic002G331000 Sobic007G189800 Sobic007G189800 Sobic002G213800--Sobic007G189800 Sobic010G270300 Sobic010G270300 Sobic002G213800--Sobic010G270300 Sobic008G124100 Sobic008G124100 Sobic002G213800--Sobic008G124100 Sobic010G057400 Sobic010G057400 Sobic002G213800--Sobic010G057400 Sobic003G400266 Sobic003G400266 Sobic002G213800--Sobic003G400266 Sobic002G213800--Sobic005G085200 Sobic005G083733--Sobic003G400266 Sobic005G083733--Sobic007G144400 Sobic007G044500 Sobic007G044500 Sobic005G083733--Sobic007G044500 Sobic005G083733--Sobic002G213800 Sobic005G083733--Sobic001G277000 Sobic005G083733--Sobic008G124100 Sobic003G148700 Sobic003G148700 Sobic005G083733--Sobic003G148700 Sobic001G191200--Sobic003G406700 Sobic001G078200 Sobic001G078200 Sobic001G191200--Sobic001G078200 Sobic001G191200--Sobic009G154600 Sobic001G191200--Sobic001G377000 Sobic009G213400 Sobic009G213400 Sobic001G191200--Sobic009G213400 Sobic001G191200--Sobic005G085200 Sobic001G191200--Sobic003G107300 Sobic001G191200--Sobic001G423100 Sobic001G191200--Sobic001G225500 Sobic002G331000--Sobic004G345900 Sobic002G331000--Sobic002G213800 Sobic002G331000--Sobic005G085200 Sobic002G331000--Sobic010G057400 Sobic002G331000--Sobic003G406700 Sobic002G331000--Sobic009G197000 Sobic004G199600 Sobic004G199600 Sobic002G331000--Sobic004G199600 Sobic009G078500 Sobic009G078500 Sobic002G331000--Sobic009G078500 Sobic002G331000--Sobic010G270300 Sobic004G345900--Sobic010G057400 Sobic004G345900--Sobic005G085200 Sobic010G057300 Sobic010G057300 Sobic004G345900--Sobic010G057300 Sobic004G345900--Sobic001G277000 Sobic004G345900--Sobic007G189800 Sobic004G345900--Sobic004G199600 Sobic004G345900--Sobic002G213800 Sobic004G345900--Sobic010G270300 Sobic010G146200 Sobic010G146200 Sobic004G345900--Sobic010G146200 Sobic007G144400--Sobic007G144400 Sobic007G144400--Sobic007G044500 Sobic007G144400--Sobic005G083733 Sobic007G144400--Sobic003G400266 Sobic007G144400--Sobic003G148700 Sobic002G051300 Sobic002G051300 Sobic007G144400--Sobic002G051300 Sobic007G144400--Sobic001G277000 Sobic001G015300 Sobic001G015300 Sobic007G144400--Sobic001G015300
Octagon: transcription factors


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