Gene annotation
Transcriptome id Sobic.010G042700.1
Synonym Sb10g003760
Functional annotation expressed protein
UniProt C5Z4C6
Pfam -
Panther DB PTHR34546 PTHR34546:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78810 : -
RAP-DB (Rice) LOC_Os06g06014.4 : expressed protein
MaizeGDB (Corn) Zm00025a047662 , Zm00025a016310
Brachypodium -
Barley HORVU6Hr1G021980.9 , HORVU6Hr1G021980.5 , HORVU6Hr1G021980.6 , HORVU6Hr1G021980.12 , HORVU6Hr1G021980.13 , HORVU6Hr1G021980.10 , HORVU6Hr1G021980.18 , HORVU6Hr1G021980.19
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G042700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G216500 expressed protein -
2 Sobic.003G067201 - -
3 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
4 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
5 Sobic.007G053700 MYB family transcription factor, putative, expressed -
6 Sobic.002G057050 - -
7 Sobic.002G239601 - -
8 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
9 Sobic.001G496600 expressed protein -
10 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
11 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
12 Sobic.006G111700 agmatine deiminase, putative, expressed K10536: agmatine deiminase
13 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
14 Sobic.001G355100 F-actin-capping protein subunit beta, putative, expressed K10365: capping protein (actin filament) muscle Z-line, beta
15 Sobic.007G038250 - -
16 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
17 Sobic.003G282700 protein kri1, putative, expressed K14786: protein KRI1
18 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
19 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
20 Sobic.001G523700 erythronate-4-phosphate dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic010G042700 Sobic010G042700 Sobic009G216500 Sobic009G216500 Sobic010G042700--Sobic009G216500 Sobic003G067201 Sobic003G067201 Sobic010G042700--Sobic003G067201 Sobic003G289700 Sobic003G289700 Sobic010G042700--Sobic003G289700 Sobic004G020900 Sobic004G020900 Sobic010G042700--Sobic004G020900 Sobic007G053700 Sobic007G053700 Sobic010G042700--Sobic007G053700 Sobic002G057050 Sobic002G057050 Sobic010G042700--Sobic002G057050 Sobic002G239601 Sobic002G239601 Sobic010G042700--Sobic002G239601 Sobic001G541000 Sobic001G541000 Sobic010G042700--Sobic001G541000 Sobic001G496600 Sobic001G496600 Sobic010G042700--Sobic001G496600 Sobic006G022400 Sobic006G022400 Sobic009G216500--Sobic006G022400 Sobic004G199200 Sobic004G199200 Sobic009G216500--Sobic004G199200 Sobic004G149400 Sobic004G149400 Sobic009G216500--Sobic004G149400 Sobic006G008300 Sobic006G008300 Sobic009G216500--Sobic006G008300 Sobic008G045000 Sobic008G045000 Sobic009G216500--Sobic008G045000 Sobic006G106200 Sobic006G106200 Sobic009G216500--Sobic006G106200 Sobic004G207000 Sobic004G207000 Sobic009G216500--Sobic004G207000 Sobic004G313500 Sobic004G313500 Sobic009G216500--Sobic004G313500 Sobic005G062600 Sobic005G062600 Sobic009G216500--Sobic005G062600 Sobic003G397100 Sobic003G397100 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G359400 Sobic003G359400 Sobic003G067201--Sobic003G359400 Sobic002G084400 Sobic002G084400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500 Sobic005G172700 Sobic005G172700 Sobic003G289700--Sobic005G172700 Sobic003G343200 Sobic003G343200 Sobic003G289700--Sobic003G343200 Sobic010G222800 Sobic010G222800 Sobic003G289700--Sobic010G222800 Sobic010G237800 Sobic010G237800 Sobic003G289700--Sobic010G237800 Sobic003G320100 Sobic003G320100 Sobic003G289700--Sobic003G320100 Sobic003G289700--Sobic006G106200 Sobic009G138300 Sobic009G138300 Sobic003G289700--Sobic009G138300 Sobic010G243100 Sobic010G243100 Sobic003G289700--Sobic010G243100 Sobic005G160200 Sobic005G160200 Sobic003G289700--Sobic005G160200 Sobic007G039300 Sobic007G039300 Sobic004G020900--Sobic007G039300 Sobic004G043750 Sobic004G043750 Sobic004G020900--Sobic004G043750 Sobic008G017900 Sobic008G017900 Sobic004G020900--Sobic008G017900 Sobic009G032200 Sobic009G032200 Sobic004G020900--Sobic009G032200 Sobic010G269300 Sobic010G269300 Sobic004G020900--Sobic010G269300 Sobic009G122800 Sobic009G122800 Sobic004G020900--Sobic009G122800 Sobic002G263700 Sobic002G263700 Sobic004G020900--Sobic002G263700 Sobic010G233000 Sobic010G233000 Sobic004G020900--Sobic010G233000 Sobic002G154400 Sobic002G154400 Sobic004G020900--Sobic002G154400 Sobic007G053700--Sobic002G154400 Sobic003G349000 Sobic003G349000 Sobic007G053700--Sobic003G349000 Sobic009G190200 Sobic009G190200 Sobic007G053700--Sobic009G190200 Sobic003G282700 Sobic003G282700 Sobic007G053700--Sobic003G282700 Sobic009G235200 Sobic009G235200 Sobic007G053700--Sobic009G235200 Sobic005G114101 Sobic005G114101 Sobic007G053700--Sobic005G114101 Sobic002G009800 Sobic002G009800 Sobic007G053700--Sobic002G009800 Sobic002G312800 Sobic002G312800 Sobic007G053700--Sobic002G312800 Sobic002G053200 Sobic002G053200 Sobic007G053700--Sobic002G053200 Sobic001G106300 Sobic001G106300 Sobic002G057050--Sobic001G106300 Sobic009G063450 Sobic009G063450 Sobic002G057050--Sobic009G063450 Sobic001G443300 Sobic001G443300 Sobic002G057050--Sobic001G443300 Sobic004G290400 Sobic004G290400 Sobic002G057050--Sobic004G290400 Sobic008G038700 Sobic008G038700 Sobic002G057050--Sobic008G038700 Sobic002G267300 Sobic002G267300 Sobic002G057050--Sobic002G267300 Sobic009G031450 Sobic009G031450 Sobic002G057050--Sobic009G031450 Sobic002G057050--Sobic010G042700 Sobic001G162900 Sobic001G162900 Sobic002G057050--Sobic001G162900 Sobic002G386900 Sobic002G386900 Sobic002G239601--Sobic002G386900 Sobic001G123600 Sobic001G123600 Sobic002G239601--Sobic001G123600 Sobic002G386600 Sobic002G386600 Sobic002G239601--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic002G239601--Sobic004G356200 Sobic007G034200 Sobic007G034200 Sobic002G239601--Sobic007G034200 Sobic008G123300 Sobic008G123300 Sobic002G239601--Sobic008G123300 Sobic003G360300 Sobic003G360300 Sobic002G239601--Sobic003G360300 Sobic003G299500 Sobic003G299500 Sobic002G239601--Sobic003G299500 Sobic001G200200 Sobic001G200200 Sobic002G239601--Sobic001G200200 Sobic001G036300 Sobic001G036300 Sobic001G541000--Sobic001G036300 Sobic003G177000 Sobic003G177000 Sobic001G541000--Sobic003G177000 Sobic001G300000 Sobic001G300000 Sobic001G541000--Sobic001G300000 Sobic009G101000 Sobic009G101000 Sobic001G541000--Sobic009G101000 Sobic007G184100 Sobic007G184100 Sobic001G541000--Sobic007G184100 Sobic006G280100 Sobic006G280100 Sobic001G541000--Sobic006G280100 Sobic003G431600 Sobic003G431600 Sobic001G541000--Sobic003G431600 Sobic003G135500 Sobic003G135500 Sobic001G541000--Sobic003G135500 Sobic010G153300 Sobic010G153300 Sobic001G541000--Sobic010G153300 Sobic001G496600--Sobic003G289700 Sobic001G496600--Sobic003G343200 Sobic001G496600--Sobic003G320100 Sobic010G257500 Sobic010G257500 Sobic001G496600--Sobic010G257500 Sobic001G496600--Sobic010G222800 Sobic002G377200 Sobic002G377200 Sobic001G496600--Sobic002G377200 Sobic002G123600 Sobic002G123600 Sobic001G496600--Sobic002G123600 Sobic008G180200 Sobic008G180200 Sobic001G496600--Sobic008G180200 Sobic008G078000 Sobic008G078000 Sobic001G496600--Sobic008G078000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.