Gene annotation
Transcriptome id Sobic.002G057050.1
Synonym -
Functional annotation -
UniProt A0A1W0W2K2
Pfam PF01535 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF744
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55840 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g35240.1 : Rf1, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU6Hr1G014310.1 , HORVU6Hr1G014310.3 , HORVU6Hr1G014310.2 , HORVU6Hr1G014310.4
Wheat TraesCS6D02G076500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G106300 fanconi anemia L, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
2 Sobic.009G063450 - -
3 Sobic.001G443300 tetratricopeptide repeat domain containing protein, expressed K03353: APC6, anaphase-promoting complex subunit 6
4 Sobic.004G290400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.008G038700 DnaK family protein, putative, expressed K09490: HSPA5, endoplasmic reticulum chaperone BiP
6 Sobic.002G267300 expressed protein -
7 Sobic.009G031450 - -
8 Sobic.010G042700 expressed protein -
9 Sobic.001G162900 zinc finger protein-related, putative, expressed K11968: ariadne-1
10 Sobic.002G128750 - -
11 Sobic.009G067200 expressed protein -
12 Sobic.009G063500 OsWAK75 - OsWAK receptor-like protein kinase, expressed -
13 Sobic.001G248600 "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@ent-kaurene synthase, chloroplast precursor, putative, expressed K04120: ent-copalyl diphosphate synthase
14 Sobic.002G384150 - -
15 Sobic.010G025100 HORMA domain containing protein, putative, expressed -
16 Sobic.001G022000 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
17 Sobic.003G243400 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
18 Sobic.007G022400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR31 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
19 Sobic.006G062200 DNA cross-link repair 1A protein, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
20 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G057050 Sobic002G057050 Sobic001G106300 Sobic001G106300 Sobic002G057050--Sobic001G106300 Sobic009G063450 Sobic009G063450 Sobic002G057050--Sobic009G063450 Sobic001G443300 Sobic001G443300 Sobic002G057050--Sobic001G443300 Sobic004G290400 Sobic004G290400 Sobic002G057050--Sobic004G290400 Sobic008G038700 Sobic008G038700 Sobic002G057050--Sobic008G038700 Sobic002G267300 Sobic002G267300 Sobic002G057050--Sobic002G267300 Sobic009G031450 Sobic009G031450 Sobic002G057050--Sobic009G031450 Sobic010G042700 Sobic010G042700 Sobic002G057050--Sobic010G042700 Sobic001G162900 Sobic001G162900 Sobic002G057050--Sobic001G162900 Sobic001G106300--Sobic002G057050 Sobic001G106300--Sobic001G443300 Sobic003G289700 Sobic003G289700 Sobic001G106300--Sobic003G289700 Sobic006G096800 Sobic006G096800 Sobic001G106300--Sobic006G096800 Sobic004G313700 Sobic004G313700 Sobic001G106300--Sobic004G313700 Sobic001G022000 Sobic001G022000 Sobic001G106300--Sobic001G022000 Sobic003G130500 Sobic003G130500 Sobic001G106300--Sobic003G130500 Sobic002G123600 Sobic002G123600 Sobic001G106300--Sobic002G123600 Sobic001G500500 Sobic001G500500 Sobic001G106300--Sobic001G500500 Sobic001G535300 Sobic001G535300 Sobic009G063450--Sobic001G535300 Sobic002G128750 Sobic002G128750 Sobic009G063450--Sobic002G128750 Sobic009G063450--Sobic002G057050 Sobic009G063450--Sobic009G031450 Sobic009G063450--Sobic004G290400 Sobic002G085700 Sobic002G085700 Sobic009G063450--Sobic002G085700 Sobic001G482500 Sobic001G482500 Sobic009G063450--Sobic001G482500 Sobic001G327400 Sobic001G327400 Sobic009G063450--Sobic001G327400 Sobic009G063450--Sobic002G267300 Sobic001G443300--Sobic001G106300 Sobic008G164375 Sobic008G164375 Sobic001G443300--Sobic008G164375 Sobic001G443300--Sobic002G057050 Sobic010G215400 Sobic010G215400 Sobic001G443300--Sobic010G215400 Sobic003G256300 Sobic003G256300 Sobic001G443300--Sobic003G256300 Sobic001G443300--Sobic004G313700 Sobic001G443300--Sobic004G290400 Sobic002G241700 Sobic002G241700 Sobic001G443300--Sobic002G241700 Sobic010G025100 Sobic010G025100 Sobic001G443300--Sobic010G025100 Sobic002G044900 Sobic002G044900 Sobic004G290400--Sobic002G044900 Sobic009G067200 Sobic009G067200 Sobic004G290400--Sobic009G067200 Sobic006G088500 Sobic006G088500 Sobic004G290400--Sobic006G088500 Sobic002G401301 Sobic002G401301 Sobic004G290400--Sobic002G401301 Sobic002G312100 Sobic002G312100 Sobic004G290400--Sobic002G312100 Sobic003G326100 Sobic003G326100 Sobic004G290400--Sobic003G326100 Sobic008G053000 Sobic008G053000 Sobic004G290400--Sobic008G053000 Sobic007G007650 Sobic007G007650 Sobic004G290400--Sobic007G007650 Sobic004G274000 Sobic004G274000 Sobic004G290400--Sobic004G274000 Sobic007G022400 Sobic007G022400 Sobic008G038700--Sobic007G022400 Sobic008G038700--Sobic002G057050 Sobic008G038700--Sobic002G128750 Sobic002G319700 Sobic002G319700 Sobic008G038700--Sobic002G319700 Sobic008G059566 Sobic008G059566 Sobic008G038700--Sobic008G059566 Sobic008G014900 Sobic008G014900 Sobic008G038700--Sobic008G014900 Sobic008G038700--Sobic001G022000 Sobic001G248600 Sobic001G248600 Sobic008G038700--Sobic001G248600 Sobic003G118700 Sobic003G118700 Sobic008G038700--Sobic003G118700 Sobic002G267300--Sobic001G022000 Sobic008G024000 Sobic008G024000 Sobic002G267300--Sobic008G024000 Sobic005G205000 Sobic005G205000 Sobic002G267300--Sobic005G205000 Sobic002G267300--Sobic001G482500 Sobic007G090418 Sobic007G090418 Sobic002G267300--Sobic007G090418 Sobic002G384800 Sobic002G384800 Sobic002G267300--Sobic002G384800 Sobic007G193900 Sobic007G193900 Sobic002G267300--Sobic007G193900 Sobic007G193500 Sobic007G193500 Sobic002G267300--Sobic007G193500 Sobic002G067050 Sobic002G067050 Sobic002G267300--Sobic002G067050 Sobic009G031450--Sobic009G063450 Sobic009G031450--Sobic002G085700 Sobic009G031450--Sobic002G384800 Sobic009G031450--Sobic001G482500 Sobic009G031450--Sobic002G319700 Sobic003G154800 Sobic003G154800 Sobic009G031450--Sobic003G154800 Sobic009G031450--Sobic004G290400 Sobic004G159600 Sobic004G159600 Sobic009G031450--Sobic004G159600 Sobic002G013500 Sobic002G013500 Sobic009G031450--Sobic002G013500 Sobic009G216500 Sobic009G216500 Sobic010G042700--Sobic009G216500 Sobic003G067201 Sobic003G067201 Sobic010G042700--Sobic003G067201 Sobic010G042700--Sobic003G289700 Sobic004G020900 Sobic004G020900 Sobic010G042700--Sobic004G020900 Sobic007G053700 Sobic007G053700 Sobic010G042700--Sobic007G053700 Sobic010G042700--Sobic002G057050 Sobic002G239601 Sobic002G239601 Sobic010G042700--Sobic002G239601 Sobic001G541000 Sobic001G541000 Sobic010G042700--Sobic001G541000 Sobic001G496600 Sobic001G496600 Sobic010G042700--Sobic001G496600 Sobic002G189800 Sobic002G189800 Sobic001G162900--Sobic002G189800 Sobic003G070300 Sobic003G070300 Sobic001G162900--Sobic003G070300 Sobic003G243400 Sobic003G243400 Sobic001G162900--Sobic003G243400 Sobic002G223100 Sobic002G223100 Sobic001G162900--Sobic002G223100 Sobic002G008000 Sobic002G008000 Sobic001G162900--Sobic002G008000 Sobic009G053001 Sobic009G053001 Sobic001G162900--Sobic009G053001 Sobic010G212600 Sobic010G212600 Sobic001G162900--Sobic010G212600 Sobic009G239000 Sobic009G239000 Sobic001G162900--Sobic009G239000 Sobic004G303150 Sobic004G303150 Sobic001G162900--Sobic004G303150
Octagon: transcription factors


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