Gene annotation
Transcriptome id Sobic.001G106300.1
Synonym Sb01g009490
Functional annotation fanconi anemia L, putative, expressed
UniProt A0A1B6QID7
Pfam PF11793 PF09765
Panther DB PTHR13206 PTHR13206:SF0
NCBI CDD KOG3268; Predicted E3 ubiquitin ligase
KEGG Orthology K10606; FANCL, E3 ubiquitin-protein ligase FANCL
Gene Ontology GO:0006281; DNA repair GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G65740 : zinc ion binding
RAP-DB (Rice) LOC_Os03g51680.2 : fanconi anemia L, putative, expressed
MaizeGDB (Corn) Zm00025a016893
Brachypodium KQK13425
Barley -
Wheat TraesCS4B02G057700 , TraesCS4B02G057700 , TraesCS4A02G256800 , TraesCS4D02G057900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G057050 - -
2 Sobic.001G443300 tetratricopeptide repeat domain containing protein, expressed K03353: APC6, anaphase-promoting complex subunit 6
3 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
4 Sobic.006G096800 expressed protein -
5 Sobic.004G313700 acetyltransferase, GNAT family, putative, expressed -
6 Sobic.001G022000 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
7 Sobic.003G130500 presenilin, putative, expressed K04505: PSEN1, presenilin 1
8 Sobic.002G123600 expressed protein -
9 Sobic.001G500500 expressed protein -
10 Sobic.004G290400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.005G034200 OsFBX114 - F-box domain containing protein, expressed -
12 Sobic.009G063500 OsWAK75 - OsWAK receptor-like protein kinase, expressed -
13 Sobic.001G534400 - -
14 Sobic.010G025100 HORMA domain containing protein, putative, expressed -
15 Sobic.003G293800 OsMan02 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
16 Sobic.002G267300 expressed protein -
17 Sobic.004G084200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@calcium-binding mitochondrial carrier CBG00135, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
18 Sobic.002G286632 - -
19 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
20 Sobic.010G042700 expressed protein -


Gene co-expression network
sample Sobic001G106300 Sobic001G106300 Sobic002G057050 Sobic002G057050 Sobic001G106300--Sobic002G057050 Sobic001G443300 Sobic001G443300 Sobic001G106300--Sobic001G443300 Sobic003G289700 Sobic003G289700 Sobic001G106300--Sobic003G289700 Sobic006G096800 Sobic006G096800 Sobic001G106300--Sobic006G096800 Sobic004G313700 Sobic004G313700 Sobic001G106300--Sobic004G313700 Sobic001G022000 Sobic001G022000 Sobic001G106300--Sobic001G022000 Sobic003G130500 Sobic003G130500 Sobic001G106300--Sobic003G130500 Sobic002G123600 Sobic002G123600 Sobic001G106300--Sobic002G123600 Sobic001G500500 Sobic001G500500 Sobic001G106300--Sobic001G500500 Sobic002G057050--Sobic001G106300 Sobic009G063450 Sobic009G063450 Sobic002G057050--Sobic009G063450 Sobic002G057050--Sobic001G443300 Sobic004G290400 Sobic004G290400 Sobic002G057050--Sobic004G290400 Sobic008G038700 Sobic008G038700 Sobic002G057050--Sobic008G038700 Sobic002G267300 Sobic002G267300 Sobic002G057050--Sobic002G267300 Sobic009G031450 Sobic009G031450 Sobic002G057050--Sobic009G031450 Sobic010G042700 Sobic010G042700 Sobic002G057050--Sobic010G042700 Sobic001G162900 Sobic001G162900 Sobic002G057050--Sobic001G162900 Sobic001G443300--Sobic001G106300 Sobic008G164375 Sobic008G164375 Sobic001G443300--Sobic008G164375 Sobic001G443300--Sobic002G057050 Sobic010G215400 Sobic010G215400 Sobic001G443300--Sobic010G215400 Sobic003G256300 Sobic003G256300 Sobic001G443300--Sobic003G256300 Sobic001G443300--Sobic004G313700 Sobic001G443300--Sobic004G290400 Sobic002G241700 Sobic002G241700 Sobic001G443300--Sobic002G241700 Sobic010G025100 Sobic010G025100 Sobic001G443300--Sobic010G025100 Sobic005G172700 Sobic005G172700 Sobic003G289700--Sobic005G172700 Sobic003G343200 Sobic003G343200 Sobic003G289700--Sobic003G343200 Sobic010G222800 Sobic010G222800 Sobic003G289700--Sobic010G222800 Sobic010G237800 Sobic010G237800 Sobic003G289700--Sobic010G237800 Sobic003G320100 Sobic003G320100 Sobic003G289700--Sobic003G320100 Sobic006G106200 Sobic006G106200 Sobic003G289700--Sobic006G106200 Sobic009G138300 Sobic009G138300 Sobic003G289700--Sobic009G138300 Sobic010G243100 Sobic010G243100 Sobic003G289700--Sobic010G243100 Sobic005G160200 Sobic005G160200 Sobic003G289700--Sobic005G160200 Sobic003G342500 Sobic003G342500 Sobic006G096800--Sobic003G342500 Sobic002G151500 Sobic002G151500 Sobic006G096800--Sobic002G151500 Sobic006G156400 Sobic006G156400 Sobic006G096800--Sobic006G156400 Sobic004G298600 Sobic004G298600 Sobic006G096800--Sobic004G298600 Sobic005G048600 Sobic005G048600 Sobic006G096800--Sobic005G048600 Sobic009G201000 Sobic009G201000 Sobic006G096800--Sobic009G201000 Sobic010G057600 Sobic010G057600 Sobic006G096800--Sobic010G057600 Sobic003G352900 Sobic003G352900 Sobic006G096800--Sobic003G352900 Sobic001G073700 Sobic001G073700 Sobic006G096800--Sobic001G073700 Sobic003G028400 Sobic003G028400 Sobic004G313700--Sobic003G028400 Sobic001G268300 Sobic001G268300 Sobic004G313700--Sobic001G268300 Sobic008G031200 Sobic008G031200 Sobic004G313700--Sobic008G031200 Sobic002G239601 Sobic002G239601 Sobic004G313700--Sobic002G239601 Sobic003G235700 Sobic003G235700 Sobic004G313700--Sobic003G235700 Sobic004G129500 Sobic004G129500 Sobic004G313700--Sobic004G129500 Sobic001G537400 Sobic001G537400 Sobic004G313700--Sobic001G537400 Sobic003G392100 Sobic003G392100 Sobic004G313700--Sobic003G392100 Sobic003G144000 Sobic003G144000 Sobic004G313700--Sobic003G144000 Sobic003G391700 Sobic003G391700 Sobic001G022000--Sobic003G391700 Sobic008G024000 Sobic008G024000 Sobic001G022000--Sobic008G024000 Sobic007G090418 Sobic007G090418 Sobic001G022000--Sobic007G090418 Sobic002G237600 Sobic002G237600 Sobic001G022000--Sobic002G237600 Sobic006G163066 Sobic006G163066 Sobic001G022000--Sobic006G163066 Sobic003G326100 Sobic003G326100 Sobic001G022000--Sobic003G326100 Sobic008G078966 Sobic008G078966 Sobic001G022000--Sobic008G078966 Sobic002G067050 Sobic002G067050 Sobic001G022000--Sobic002G067050 Sobic002G078600 Sobic002G078600 Sobic001G022000--Sobic002G078600 Sobic007G119700 Sobic007G119700 Sobic003G130500--Sobic007G119700 Sobic010G065600 Sobic010G065600 Sobic003G130500--Sobic010G065600 Sobic004G241600 Sobic004G241600 Sobic003G130500--Sobic004G241600 Sobic009G199500 Sobic009G199500 Sobic003G130500--Sobic009G199500 Sobic004G350200 Sobic004G350200 Sobic003G130500--Sobic004G350200 Sobic002G059000 Sobic002G059000 Sobic003G130500--Sobic002G059000 Sobic001G152700 Sobic001G152700 Sobic003G130500--Sobic001G152700 Sobic002G023100 Sobic002G023100 Sobic003G130500--Sobic002G023100 Sobic009G215901 Sobic009G215901 Sobic003G130500--Sobic009G215901 Sobic006G127200 Sobic006G127200 Sobic002G123600--Sobic006G127200 Sobic008G090400 Sobic008G090400 Sobic002G123600--Sobic008G090400 Sobic004G306100 Sobic004G306100 Sobic002G123600--Sobic004G306100 Sobic002G095300 Sobic002G095300 Sobic002G123600--Sobic002G095300 Sobic002G271400 Sobic002G271400 Sobic002G123600--Sobic002G271400 Sobic003G397100 Sobic003G397100 Sobic002G123600--Sobic003G397100 Sobic001G242300 Sobic001G242300 Sobic002G123600--Sobic001G242300 Sobic003G411700 Sobic003G411700 Sobic002G123600--Sobic003G411700 Sobic002G123600--Sobic004G129500 Sobic001G137400 Sobic001G137400 Sobic001G500500--Sobic001G137400 Sobic001G288000 Sobic001G288000 Sobic001G500500--Sobic001G288000 Sobic008G098700 Sobic008G098700 Sobic001G500500--Sobic008G098700 Sobic001G500500--Sobic010G243100 Sobic001G500500--Sobic003G289700 Sobic006G215800 Sobic006G215800 Sobic001G500500--Sobic006G215800 Sobic002G374200 Sobic002G374200 Sobic001G500500--Sobic002G374200 Sobic002G299200 Sobic002G299200 Sobic001G500500--Sobic002G299200 Sobic004G313400 Sobic004G313400 Sobic001G500500--Sobic004G313400
Octagon: transcription factors


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