Gene annotation
Transcriptome id Sobic.003G130500.1
Synonym Sb03g011100, PS1
Functional annotation presenilin, putative, expressed
UniProt C5XH90
Pfam PF01080
Panther DB PTHR10202 PTHR10202:SF15
NCBI CDD KOG2736; Presenilin
KEGG Orthology K04505; PSEN1, presenilin 1
Gene Ontology GO:0016021; integral component of membrane GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G08700 : Presenilin-1
RAP-DB (Rice) LOC_Os01g16930.1 : presenilin, putative, expressed
MaizeGDB (Corn) Zm00025a024132 , Zm00025a035206
Brachypodium KQK03892
Barley HORVU3Hr1G039120.1
Wheat TraesCS3D02G192400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G119700 OsFBX8 - F-box domain containing protein, expressed -
2 Sobic.010G065600 expressed protein -
3 Sobic.004G241600 MAGE-8 antigen-related, putative, expressed -
4 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
5 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
6 Sobic.002G059000 OsFBX237 - F-box domain containing protein, expressed -
7 Sobic.001G152700 expressed protein -
8 Sobic.002G023100 heat shock protein DnaJ, putative, expressed -
9 Sobic.009G215901 - -
10 Sobic.004G071500 OsFBX49 - F-box domain containing protein, expressed -
11 Sobic.001G043200 expressed protein -
12 Sobic.003G120700 glycosyl transferase, group 1 domain containing protein, expressed -
13 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
14 Sobic.004G233600 expressed protein -
15 Sobic.007G158900 expressed protein -
16 Sobic.001G229300 expressed protein -
17 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.001G305900 GTP binding protein, putative, expressed -
19 Sobic.007G080600 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
20 Sobic.001G143900 expressed protein -


Gene co-expression network
sample Sobic003G130500 Sobic003G130500 Sobic007G119700 Sobic007G119700 Sobic003G130500--Sobic007G119700 Sobic010G065600 Sobic010G065600 Sobic003G130500--Sobic010G065600 Sobic004G241600 Sobic004G241600 Sobic003G130500--Sobic004G241600 Sobic009G199500 Sobic009G199500 Sobic003G130500--Sobic009G199500 Sobic004G350200 Sobic004G350200 Sobic003G130500--Sobic004G350200 Sobic002G059000 Sobic002G059000 Sobic003G130500--Sobic002G059000 Sobic001G152700 Sobic001G152700 Sobic003G130500--Sobic001G152700 Sobic002G023100 Sobic002G023100 Sobic003G130500--Sobic002G023100 Sobic009G215901 Sobic009G215901 Sobic003G130500--Sobic009G215901 Sobic007G119700--Sobic001G152700 Sobic010G160300 Sobic010G160300 Sobic007G119700--Sobic010G160300 Sobic002G397900 Sobic002G397900 Sobic007G119700--Sobic002G397900 Sobic001G280500 Sobic001G280500 Sobic007G119700--Sobic001G280500 Sobic001G043200 Sobic001G043200 Sobic007G119700--Sobic001G043200 Sobic002G348400 Sobic002G348400 Sobic007G119700--Sobic002G348400 Sobic007G119700--Sobic002G023100 Sobic002G304700 Sobic002G304700 Sobic007G119700--Sobic002G304700 Sobic001G498800 Sobic001G498800 Sobic007G119700--Sobic001G498800 Sobic003G129300 Sobic003G129300 Sobic010G065600--Sobic003G129300 Sobic001G229300 Sobic001G229300 Sobic010G065600--Sobic001G229300 Sobic001G123600 Sobic001G123600 Sobic010G065600--Sobic001G123600 Sobic003G023200 Sobic003G023200 Sobic010G065600--Sobic003G023200 Sobic003G222700 Sobic003G222700 Sobic010G065600--Sobic003G222700 Sobic009G063800 Sobic009G063800 Sobic010G065600--Sobic009G063800 Sobic010G235700 Sobic010G235700 Sobic010G065600--Sobic010G235700 Sobic002G239601 Sobic002G239601 Sobic010G065600--Sobic002G239601 Sobic002G208400 Sobic002G208400 Sobic010G065600--Sobic002G208400 Sobic005G178950 Sobic005G178950 Sobic004G241600--Sobic005G178950 Sobic006G091000 Sobic006G091000 Sobic004G241600--Sobic006G091000 Sobic004G241600--Sobic010G235700 Sobic009G059400 Sobic009G059400 Sobic004G241600--Sobic009G059400 Sobic004G241600--Sobic002G059000 Sobic001G326600 Sobic001G326600 Sobic004G241600--Sobic001G326600 Sobic004G241600--Sobic003G222700 Sobic003G205100 Sobic003G205100 Sobic004G241600--Sobic003G205100 Sobic007G031300 Sobic007G031300 Sobic004G241600--Sobic007G031300 Sobic007G158900 Sobic007G158900 Sobic009G199500--Sobic007G158900 Sobic009G227100 Sobic009G227100 Sobic009G199500--Sobic009G227100 Sobic003G445200 Sobic003G445200 Sobic009G199500--Sobic003G445200 Sobic002G299100 Sobic002G299100 Sobic009G199500--Sobic002G299100 Sobic002G131400 Sobic002G131400 Sobic009G199500--Sobic002G131400 Sobic004G122900 Sobic004G122900 Sobic009G199500--Sobic004G122900 Sobic004G084400 Sobic004G084400 Sobic009G199500--Sobic004G084400 Sobic009G199500--Sobic001G043200 Sobic002G398500 Sobic002G398500 Sobic009G199500--Sobic002G398500 Sobic010G038900 Sobic010G038900 Sobic004G350200--Sobic010G038900 Sobic004G000400 Sobic004G000400 Sobic004G350200--Sobic004G000400 Sobic005G160200 Sobic005G160200 Sobic004G350200--Sobic005G160200 Sobic007G036800 Sobic007G036800 Sobic004G350200--Sobic007G036800 Sobic004G063300 Sobic004G063300 Sobic004G350200--Sobic004G063300 Sobic004G350200--Sobic001G123600 Sobic004G350200--Sobic009G063800 Sobic006G106600 Sobic006G106600 Sobic004G350200--Sobic006G106600 Sobic004G350200--Sobic001G229300 Sobic002G267400 Sobic002G267400 Sobic002G059000--Sobic002G267400 Sobic007G148400 Sobic007G148400 Sobic002G059000--Sobic007G148400 Sobic002G059000--Sobic004G241600 Sobic007G192100 Sobic007G192100 Sobic002G059000--Sobic007G192100 Sobic003G148900 Sobic003G148900 Sobic002G059000--Sobic003G148900 Sobic007G146600 Sobic007G146600 Sobic002G059000--Sobic007G146600 Sobic009G086200 Sobic009G086200 Sobic002G059000--Sobic009G086200 Sobic002G399500 Sobic002G399500 Sobic002G059000--Sobic002G399500 Sobic007G117800 Sobic007G117800 Sobic002G059000--Sobic007G117800 Sobic002G106200 Sobic002G106200 Sobic001G152700--Sobic002G106200 Sobic001G152700--Sobic001G043200 Sobic001G152700--Sobic007G119700 Sobic009G040325 Sobic009G040325 Sobic001G152700--Sobic009G040325 Sobic001G152700--Sobic010G160300 Sobic009G040250 Sobic009G040250 Sobic001G152700--Sobic009G040250 Sobic001G114200 Sobic001G114200 Sobic001G152700--Sobic001G114200 Sobic006G012300 Sobic006G012300 Sobic001G152700--Sobic006G012300 Sobic009G122500 Sobic009G122500 Sobic001G152700--Sobic009G122500 Sobic003G190600 Sobic003G190600 Sobic002G023100--Sobic003G190600 Sobic003G160500 Sobic003G160500 Sobic002G023100--Sobic003G160500 Sobic003G305900 Sobic003G305900 Sobic002G023100--Sobic003G305900 Sobic002G023100--Sobic007G158900 Sobic001G061200 Sobic001G061200 Sobic002G023100--Sobic001G061200 Sobic009G050500 Sobic009G050500 Sobic002G023100--Sobic009G050500 Sobic003G058500 Sobic003G058500 Sobic002G023100--Sobic003G058500 Sobic010G181600 Sobic010G181600 Sobic002G023100--Sobic010G181600 Sobic004G141400 Sobic004G141400 Sobic002G023100--Sobic004G141400 Sobic006G220400 Sobic006G220400 Sobic009G215901--Sobic006G220400 Sobic002G108100 Sobic002G108100 Sobic009G215901--Sobic002G108100 Sobic001G478900 Sobic001G478900 Sobic009G215901--Sobic001G478900 Sobic004G215600 Sobic004G215600 Sobic009G215901--Sobic004G215600 Sobic009G215901--Sobic001G043200 Sobic007G116000 Sobic007G116000 Sobic009G215901--Sobic007G116000 Sobic004G194100 Sobic004G194100 Sobic009G215901--Sobic004G194100 Sobic009G215901--Sobic007G119700 Sobic003G211700 Sobic003G211700 Sobic009G215901--Sobic003G211700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.