Gene annotation
Transcriptome id Sobic.004G071500.1,Sobic.004G071500.2
Synonym Sb04g005990
Functional annotation OsFBX49 - F-box domain containing protein, expressed
UniProt A0A194YN45 , A0A194YN56
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G02030 : F-box family protein
RAP-DB (Rice) LOC_Os02g27400.1 : OsFBX49 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G071500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G046250 - -
2 Sobic.001G152700 expressed protein -
3 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
4 Sobic.001G229300 expressed protein -
5 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
6 Sobic.006G239400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11366: USP22_27_51, ubiquitin carboxyl-terminal hydrolase 22/27/51
7 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
8 Sobic.005G087300 protein kinase family protein, putative, expressed -
9 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
10 Sobic.003G010900 expressed protein -
11 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
12 Sobic.007G119700 OsFBX8 - F-box domain containing protein, expressed -
13 Sobic.002G160400 Glucose-1-phosphate adenylyltransferase small subunit(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
14 Sobic.009G040250 - -
15 Sobic.009G000100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
16 Sobic.010G171000 phospholipid-transporting ATPase 4, putative, expressed K01530: phospholipid-translocating ATPase
17 Sobic.002G106200 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
18 Sobic.001G050500 galactosyltransferase family protein, putative, expressed -
19 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
20 Sobic.006G203300 GPR89A, putative, expressed -


Gene co-expression network
sample Sobic004G071500 Sobic004G071500 Sobic005G046250 Sobic005G046250 Sobic004G071500--Sobic005G046250 Sobic001G152700 Sobic001G152700 Sobic004G071500--Sobic001G152700 Sobic004G000400 Sobic004G000400 Sobic004G071500--Sobic004G000400 Sobic001G229300 Sobic001G229300 Sobic004G071500--Sobic001G229300 Sobic010G160300 Sobic010G160300 Sobic004G071500--Sobic010G160300 Sobic006G239400 Sobic006G239400 Sobic004G071500--Sobic006G239400 Sobic001G034500 Sobic001G034500 Sobic004G071500--Sobic001G034500 Sobic005G087300 Sobic005G087300 Sobic004G071500--Sobic005G087300 Sobic006G106600 Sobic006G106600 Sobic004G071500--Sobic006G106600 Sobic005G046250--Sobic004G071500 Sobic005G046250--Sobic006G239400 Sobic009G208100 Sobic009G208100 Sobic005G046250--Sobic009G208100 Sobic004G236200 Sobic004G236200 Sobic005G046250--Sobic004G236200 Sobic003G269800 Sobic003G269800 Sobic005G046250--Sobic003G269800 Sobic001G478800 Sobic001G478800 Sobic005G046250--Sobic001G478800 Sobic006G203300 Sobic006G203300 Sobic005G046250--Sobic006G203300 Sobic004G147500 Sobic004G147500 Sobic005G046250--Sobic004G147500 Sobic003G314300 Sobic003G314300 Sobic005G046250--Sobic003G314300 Sobic002G106200 Sobic002G106200 Sobic001G152700--Sobic002G106200 Sobic001G043200 Sobic001G043200 Sobic001G152700--Sobic001G043200 Sobic007G119700 Sobic007G119700 Sobic001G152700--Sobic007G119700 Sobic009G040325 Sobic009G040325 Sobic001G152700--Sobic009G040325 Sobic001G152700--Sobic010G160300 Sobic009G040250 Sobic009G040250 Sobic001G152700--Sobic009G040250 Sobic001G114200 Sobic001G114200 Sobic001G152700--Sobic001G114200 Sobic006G012300 Sobic006G012300 Sobic001G152700--Sobic006G012300 Sobic009G122500 Sobic009G122500 Sobic001G152700--Sobic009G122500 Sobic004G000400--Sobic006G106600 Sobic002G173400 Sobic002G173400 Sobic004G000400--Sobic002G173400 Sobic007G186400 Sobic007G186400 Sobic004G000400--Sobic007G186400 Sobic009G120400 Sobic009G120400 Sobic004G000400--Sobic009G120400 Sobic004G350200 Sobic004G350200 Sobic004G000400--Sobic004G350200 Sobic002G271400 Sobic002G271400 Sobic004G000400--Sobic002G271400 Sobic004G215600 Sobic004G215600 Sobic004G000400--Sobic004G215600 Sobic002G123600 Sobic002G123600 Sobic004G000400--Sobic002G123600 Sobic010G257500 Sobic010G257500 Sobic004G000400--Sobic010G257500 Sobic001G123600 Sobic001G123600 Sobic001G229300--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic001G229300--Sobic003G129300 Sobic004G354100 Sobic004G354100 Sobic001G229300--Sobic004G354100 Sobic004G256300 Sobic004G256300 Sobic001G229300--Sobic004G256300 Sobic003G010900 Sobic003G010900 Sobic001G229300--Sobic003G010900 Sobic002G066800 Sobic002G066800 Sobic001G229300--Sobic002G066800 Sobic003G222700 Sobic003G222700 Sobic001G229300--Sobic003G222700 Sobic002G142700 Sobic002G142700 Sobic001G229300--Sobic002G142700 Sobic001G229300--Sobic006G106600 Sobic002G304700 Sobic002G304700 Sobic010G160300--Sobic002G304700 Sobic001G280500 Sobic001G280500 Sobic010G160300--Sobic001G280500 Sobic005G063200 Sobic005G063200 Sobic010G160300--Sobic005G063200 Sobic010G160300--Sobic001G114200 Sobic001G501900 Sobic001G501900 Sobic010G160300--Sobic001G501900 Sobic004G350700 Sobic004G350700 Sobic010G160300--Sobic004G350700 Sobic002G007800 Sobic002G007800 Sobic010G160300--Sobic002G007800 Sobic003G117800 Sobic003G117800 Sobic010G160300--Sobic003G117800 Sobic001G149000 Sobic001G149000 Sobic010G160300--Sobic001G149000 Sobic003G209200 Sobic003G209200 Sobic006G239400--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic006G239400--Sobic009G077600 Sobic009G128500 Sobic009G128500 Sobic006G239400--Sobic009G128500 Sobic007G005500 Sobic007G005500 Sobic006G239400--Sobic007G005500 Sobic006G077300 Sobic006G077300 Sobic006G239400--Sobic006G077300 Sobic006G239400--Sobic006G203300 Sobic010G223400 Sobic010G223400 Sobic006G239400--Sobic010G223400 Sobic006G021700 Sobic006G021700 Sobic006G239400--Sobic006G021700 Sobic001G308400 Sobic001G308400 Sobic006G239400--Sobic001G308400 Sobic001G477700 Sobic001G477700 Sobic001G034500--Sobic001G477700 Sobic003G284000 Sobic003G284000 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G004100 Sobic001G004100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G413800 Sobic001G413800 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic007G042900 Sobic007G042900 Sobic001G034500--Sobic007G042900 Sobic005G087300--Sobic009G040250 Sobic002G313100 Sobic002G313100 Sobic005G087300--Sobic002G313100 Sobic005G087300--Sobic002G066800 Sobic004G198300 Sobic004G198300 Sobic005G087300--Sobic004G198300 Sobic007G086600 Sobic007G086600 Sobic005G087300--Sobic007G086600 Sobic003G393200 Sobic003G393200 Sobic005G087300--Sobic003G393200 Sobic007G105700 Sobic007G105700 Sobic005G087300--Sobic007G105700 Sobic002G322400 Sobic002G322400 Sobic005G087300--Sobic002G322400 Sobic005G087300--Sobic010G160300 Sobic006G106600--Sobic004G000400 Sobic006G106600--Sobic002G173400 Sobic006G106600--Sobic007G186400 Sobic006G106600--Sobic004G215600 Sobic006G106600--Sobic001G229300 Sobic001G191900 Sobic001G191900 Sobic006G106600--Sobic001G191900 Sobic006G106600--Sobic002G271400 Sobic010G030000 Sobic010G030000 Sobic006G106600--Sobic010G030000 Sobic008G131900 Sobic008G131900 Sobic006G106600--Sobic008G131900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.