Gene annotation
Transcriptome id Sobic.005G046250.1
Synonym -
Functional annotation -
UniProt A0A1Z5RGS2
Pfam PF00931 PF03514
Panther DB PTHR31636 PTHR31636:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41920 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os11g06210.1 : expressed protein
MaizeGDB (Corn) Zm00025a034156
Brachypodium KQJ81495
Barley HORVU4Hr1G020490.40 , HORVU5Hr1G099160.2 , HORVU5Hr1G099160.1 , HORVU5Hr1G099160.6 , HORVU5Hr1G099160.7 , HORVU5Hr1G099160.5 , HORVU5Hr1G099160.8 , HORVU5Hr1G099160.9 , HORVU4Hr1G020490.35 , HORVU4Hr1G020490.37 , HORVU4Hr1G020490.36 , HORVU4Hr1G020490.31 , HORVU4Hr1G020490.33 , HORVU4Hr1G020490.32 , HORVU4Hr1G020490.39 , HORVU4Hr1G020490.38 , HORVU5Hr1G099160.11 , HORVU5Hr1G099160.12 , HORVU5Hr1G099160.13 , HORVU5Hr1G099160.14 , HORVU5Hr1G099160.15 , HORVU4Hr1G020490.3 , HORVU4Hr1G020490.2 , HORVU4Hr1G020490.1 , HORVU4Hr1G020490.7 , HORVU4Hr1G020490.4 , HORVU4Hr1G020490.9 , HORVU4Hr1G020490.8 , HORVU4Hr1G020490.28 , HORVU4Hr1G020490.29 , HORVU4Hr1G020490.22 , HORVU4Hr1G020490.23 , HORVU4Hr1G020490.20 , HORVU4Hr1G020490.21 , HORVU4Hr1G020490.26 , HORVU4Hr1G020490.27 , HORVU4Hr1G020490.25 , HORVU4Hr1G020490.13 , HORVU4Hr1G020490.12 , HORVU4Hr1G020490.11 , HORVU4Hr1G020490.10 , HORVU4Hr1G020490.17 , HORVU4Hr1G020490.16 , HORVU4Hr1G020490.15 , HORVU4Hr1G020490.19 , HORVU4Hr1G020490.18
Wheat TraesCS5D02G419300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G071500 OsFBX49 - F-box domain containing protein, expressed -
2 Sobic.006G239400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11366: USP22_27_51, ubiquitin carboxyl-terminal hydrolase 22/27/51
3 Sobic.009G208100 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
4 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
5 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
6 Sobic.001G478800 expressed protein -
7 Sobic.006G203300 GPR89A, putative, expressed -
8 Sobic.004G147500 tetratricopeptide repeat domain containing protein, expressed K09667: protein O-GlcNAc transferase
9 Sobic.003G314300 WD domain, G-beta repeat domain containing protein, expressed -
10 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
11 Sobic.003G084000 transporter family protein, putative, expressed -
12 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
13 Sobic.007G056600 expressed protein -
14 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
15 Sobic.009G000100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
16 Sobic.004G257200 phosphatidylinositol transfer, putative, expressed -
17 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
18 Sobic.004G178300 splicing factor U2AF, putative, expressed -
19 Sobic.004G261600 expressed protein -
20 Sobic.004G124500 transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic005G046250 Sobic005G046250 Sobic004G071500 Sobic004G071500 Sobic005G046250--Sobic004G071500 Sobic006G239400 Sobic006G239400 Sobic005G046250--Sobic006G239400 Sobic009G208100 Sobic009G208100 Sobic005G046250--Sobic009G208100 Sobic004G236200 Sobic004G236200 Sobic005G046250--Sobic004G236200 Sobic003G269800 Sobic003G269800 Sobic005G046250--Sobic003G269800 Sobic001G478800 Sobic001G478800 Sobic005G046250--Sobic001G478800 Sobic006G203300 Sobic006G203300 Sobic005G046250--Sobic006G203300 Sobic004G147500 Sobic004G147500 Sobic005G046250--Sobic004G147500 Sobic003G314300 Sobic003G314300 Sobic005G046250--Sobic003G314300 Sobic004G071500--Sobic005G046250 Sobic001G152700 Sobic001G152700 Sobic004G071500--Sobic001G152700 Sobic004G000400 Sobic004G000400 Sobic004G071500--Sobic004G000400 Sobic001G229300 Sobic001G229300 Sobic004G071500--Sobic001G229300 Sobic010G160300 Sobic010G160300 Sobic004G071500--Sobic010G160300 Sobic004G071500--Sobic006G239400 Sobic001G034500 Sobic001G034500 Sobic004G071500--Sobic001G034500 Sobic005G087300 Sobic005G087300 Sobic004G071500--Sobic005G087300 Sobic006G106600 Sobic006G106600 Sobic004G071500--Sobic006G106600 Sobic003G209200 Sobic003G209200 Sobic006G239400--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic006G239400--Sobic009G077600 Sobic009G128500 Sobic009G128500 Sobic006G239400--Sobic009G128500 Sobic007G005500 Sobic007G005500 Sobic006G239400--Sobic007G005500 Sobic006G077300 Sobic006G077300 Sobic006G239400--Sobic006G077300 Sobic006G239400--Sobic006G203300 Sobic010G223400 Sobic010G223400 Sobic006G239400--Sobic010G223400 Sobic006G021700 Sobic006G021700 Sobic006G239400--Sobic006G021700 Sobic001G308400 Sobic001G308400 Sobic006G239400--Sobic001G308400 Sobic002G313900 Sobic002G313900 Sobic009G208100--Sobic002G313900 Sobic003G284000 Sobic003G284000 Sobic009G208100--Sobic003G284000 Sobic003G084000 Sobic003G084000 Sobic009G208100--Sobic003G084000 Sobic009G208100--Sobic001G478800 Sobic001G477700 Sobic001G477700 Sobic009G208100--Sobic001G477700 Sobic006G139100 Sobic006G139100 Sobic009G208100--Sobic006G139100 Sobic010G072800 Sobic010G072800 Sobic009G208100--Sobic010G072800 Sobic001G375600 Sobic001G375600 Sobic009G208100--Sobic001G375600 Sobic004G228800 Sobic004G228800 Sobic009G208100--Sobic004G228800 Sobic003G270600 Sobic003G270600 Sobic004G236200--Sobic003G270600 Sobic001G056800 Sobic001G056800 Sobic004G236200--Sobic001G056800 Sobic004G236200--Sobic006G077300 Sobic004G236200--Sobic004G228800 Sobic004G236200--Sobic006G203300 Sobic003G427600 Sobic003G427600 Sobic004G236200--Sobic003G427600 Sobic003G394200 Sobic003G394200 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic002G156000 Sobic002G156000 Sobic004G236200--Sobic002G156000 Sobic009G118600 Sobic009G118600 Sobic003G269800--Sobic009G118600 Sobic001G217400 Sobic001G217400 Sobic003G269800--Sobic001G217400 Sobic004G124500 Sobic004G124500 Sobic003G269800--Sobic004G124500 Sobic001G409300 Sobic001G409300 Sobic003G269800--Sobic001G409300 Sobic007G056600 Sobic007G056600 Sobic003G269800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic003G269800--Sobic003G126300 Sobic001G399800 Sobic001G399800 Sobic003G269800--Sobic001G399800 Sobic004G211900 Sobic004G211900 Sobic003G269800--Sobic004G211900 Sobic003G281900 Sobic003G281900 Sobic003G269800--Sobic003G281900 Sobic001G478800--Sobic002G313900 Sobic003G227100 Sobic003G227100 Sobic001G478800--Sobic003G227100 Sobic001G478800--Sobic004G236200 Sobic001G478800--Sobic006G203300 Sobic004G323700 Sobic004G323700 Sobic001G478800--Sobic004G323700 Sobic004G257200 Sobic004G257200 Sobic001G478800--Sobic004G257200 Sobic002G114900 Sobic002G114900 Sobic001G478800--Sobic002G114900 Sobic001G478800--Sobic009G208100 Sobic001G478800--Sobic006G139100 Sobic006G203300--Sobic003G394200 Sobic003G346400 Sobic003G346400 Sobic006G203300--Sobic003G346400 Sobic010G169900 Sobic010G169900 Sobic006G203300--Sobic010G169900 Sobic006G203300--Sobic004G236200 Sobic001G445500 Sobic001G445500 Sobic006G203300--Sobic001G445500 Sobic004G254800 Sobic004G254800 Sobic006G203300--Sobic004G254800 Sobic006G203300--Sobic001G308400 Sobic001G474400 Sobic001G474400 Sobic006G203300--Sobic001G474400 Sobic003G036500 Sobic003G036500 Sobic006G203300--Sobic003G036500 Sobic004G223300 Sobic004G223300 Sobic004G147500--Sobic004G223300 Sobic002G042600 Sobic002G042600 Sobic004G147500--Sobic002G042600 Sobic005G062200 Sobic005G062200 Sobic004G147500--Sobic005G062200 Sobic004G147500--Sobic003G209200 Sobic002G340900 Sobic002G340900 Sobic004G147500--Sobic002G340900 Sobic009G003700 Sobic009G003700 Sobic004G147500--Sobic009G003700 Sobic001G014300 Sobic001G014300 Sobic004G147500--Sobic001G014300 Sobic004G053500 Sobic004G053500 Sobic004G147500--Sobic004G053500 Sobic006G166200 Sobic006G166200 Sobic004G147500--Sobic006G166200 Sobic001G097500 Sobic001G097500 Sobic003G314300--Sobic001G097500 Sobic005G017200 Sobic005G017200 Sobic003G314300--Sobic005G017200 Sobic003G314300--Sobic010G223400 Sobic001G193100 Sobic001G193100 Sobic003G314300--Sobic001G193100 Sobic005G114500 Sobic005G114500 Sobic003G314300--Sobic005G114500 Sobic003G314300--Sobic009G128500 Sobic004G207900 Sobic004G207900 Sobic003G314300--Sobic004G207900 Sobic001G097900 Sobic001G097900 Sobic003G314300--Sobic001G097900 Sobic002G290100 Sobic002G290100 Sobic003G314300--Sobic002G290100
Octagon: transcription factors


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